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update pathfinder branch #727
Commits on Oct 5, 2022
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Commits on Oct 6, 2022
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Commits on Oct 9, 2022
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Merge pull request #701 from andrjohns/add-model-methods
Add optional methods for log_prob, grad_log_prob, hessian, un/constrain pars
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Commits on Oct 10, 2022
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Commits on Oct 12, 2022
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Merge pull request #702 from andrjohns/expose-stan-functions
Add optional method for exposing stan functions to R
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Commits on Oct 16, 2022
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Merge pull request #704 from andrjohns/constrain-return-all
Make constrain_pars behaviour consistent with rstan
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Merge pull request #705 from andrjohns/expose-functions-from-model
Allow exposing functions without sampling
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Commits on Oct 17, 2022
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Commits on Oct 20, 2022
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Merge pull request #706 from andrjohns/expose-skeleton
Expose skeleton
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Commits on Oct 24, 2022
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Commits on Oct 25, 2022
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Commits on Oct 29, 2022
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Merge pull request #696 from andrjohns/wsl-cmdstan-internal
WSL - Run `cmdstan` and models under WSL filesystem
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Merge pull request #709 from andrjohns/method-envs-fix
Bugfix - Deep copy method/function environments
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Commits on Nov 6, 2022
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Merge pull request #710 from andrjohns/hessian-adjust-transform
Add option for including jacobian adjustments in hessian method
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Commits on Nov 7, 2022
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Bump r-lib/actions from 2.2.8 to 2.3.1
Bumps [r-lib/actions](https://github.com/r-lib/actions) from 2.2.8 to 2.3.1. - [Release notes](https://github.com/r-lib/actions/releases) - [Commits](r-lib/actions@v2.2.8...v2.3.1) --- updated-dependencies: - dependency-name: r-lib/actions dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>
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Merge pull request #712 from stan-dev/dependabot/github_actions/r-lib…
…/actions-2.3.1 Bump r-lib/actions from 2.2.8 to 2.3.1
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Merge pull request #711 from andrjohns/wsl-ci-tests
WSL Optimisations and Bugfixes for CI
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Merge pull request #690 from stan-dev/use-stancflags-from-make-local
add stancflags from make/local
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Merge pull request #715 from stan-dev/andrjohns-patch-1
Update co-authors
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Commits on Nov 8, 2022
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Commits on Nov 11, 2022
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Commits on Nov 16, 2022
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Commits on Nov 18, 2022
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Merge pull request #722 from stan-dev/fix-format-method-example
fix error in example usage of model$format
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Commits on Nov 21, 2022
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Commits on Nov 25, 2022
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Merge pull request #717 from stan-dev/2-30-1-rc
Remove the test that no longer fails with 2.31
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Merge pull request #724 from andrjohns/model-methods-updates
Update model methods parameter naming and extract skeleton function
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Commits on Dec 12, 2022
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Commits on Dec 19, 2022
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Merge pull request #729 from andrjohns/unconstrain-draws-method
Add method for unconstraining all parameter draws
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Commits on Jan 16, 2023
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Bump r-lib/actions from 2.3.1 to 2.4.0
Bumps [r-lib/actions](https://github.com/r-lib/actions) from 2.3.1 to 2.4.0. - [Release notes](https://github.com/r-lib/actions/releases) - [Commits](r-lib/actions@v2.3.1...v2.4.0) --- updated-dependencies: - dependency-name: r-lib/actions dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>
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Commits on Jan 17, 2023
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Merge pull request #732 from stan-dev/dependabot/github_actions/r-lib…
…/actions-2.4.0 Bump r-lib/actions from 2.3.1 to 2.4.0
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Commits on Jan 30, 2023
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Bump Vampire/setup-wsl from 1 to 2
Bumps [Vampire/setup-wsl](https://github.com/Vampire/setup-wsl) from 1 to 2. - [Release notes](https://github.com/Vampire/setup-wsl/releases) - [Commits](Vampire/setup-wsl@v1...v2) --- updated-dependencies: - dependency-name: Vampire/setup-wsl dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
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Merge pull request #736 from sbfnk/master
Improve efficiency of variable matching
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Commits on Feb 6, 2023
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Merge pull request #734 from stan-dev/dependabot/github_actions/Vampi…
…re/setup-wsl-2 Bump Vampire/setup-wsl from 1 to 2
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Bump n1hility/cancel-previous-runs from 2 to 3
Bumps [n1hility/cancel-previous-runs](https://github.com/n1hility/cancel-previous-runs) from 2 to 3. - [Release notes](https://github.com/n1hility/cancel-previous-runs/releases) - [Commits](n1hility/cancel-previous-runs@v2...v3) --- updated-dependencies: - dependency-name: n1hility/cancel-previous-runs dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
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Commits on Feb 7, 2023
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Merge pull request #737 from stan-dev/dependabot/github_actions/n1hil…
…ity/cancel-previous-runs-3 Bump n1hility/cancel-previous-runs from 2 to 3
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Merge pull request #742 from stan-dev/fix-expose-int
Fix exposing functions with int return types
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Merge pull request #743 from stan-dev/expose-overloads-error
Throw when attempting to expose overloaded functions
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Commits on Mar 23, 2023
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Merge pull request #745 from stan-dev/verbose-download
Add verbosity to download output and errors
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Merge pull request #747 from stan-dev/expose-functions-external
Add version check when exposing external functions
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Merge pull request #746 from stan-dev/stdout-and-stderr
Update handling of show_messages, add show_exceptions
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Merge pull request #755 from stan-dev/rtools43-support
Rtools43 support
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Merge pull request #756 from stan-dev/m1-stanc
Add stanc M1 make patch, suppress boost warnings
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Merge pull request #751 from gravesti/summary_examples
more examples
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Merge pull request #769 from stan-dev/v2.32-compat
Fix expose_functions under 2.32
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Bump r-lib/actions from 2.4.0 to 2.6.3
Bumps [r-lib/actions](https://github.com/r-lib/actions) from 2.4.0 to 2.6.3. - [Release notes](https://github.com/r-lib/actions/releases) - [Commits](r-lib/actions@v2.4.0...v2.6.3) --- updated-dependencies: - dependency-name: r-lib/actions dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>
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Merge pull request #753 from stan-dev/bump-posterior-version
bump posterior version
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Merge pull request #764 from stan-dev/dependabot/github_actions/r-lib…
…/actions-2.6.3 Bump r-lib/actions from 2.4.0 to 2.6.3
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Merge pull request #775 from adrian-lison/master
Fix model$format and model$check_syntax for compiled models with include-paths
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Merge pull request #779 from stan-dev/suppress-ci-failures
Temporarily suppress CI failures
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Merge branch 'master' into rtools-compat-fixes
* master: Temporarily skip CI failures Temporarily skip CI failures
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Merge branch 'master' into posterior_vignette
* master: (22 commits) Temporarily skip CI failures Temporarily skip CI failures Fix bug in check_syntax and format with include_paths on compiled model Add tests for check_syntax and format on compiled model Bump r-lib/actions from 2.4.0 to 2.6.3 Fix functor name Windows oldrel requires rtools42 Bump actions ver Auto rtools ver Fix expose_functions under 2.32 skips append to make local one more hpp reading fix fix hpp last line warning Update install.R Update install.R Add stanc M1 make patch, suppress boost warnings Fix Rtools42 minor version Update workflow rtools Update utilities for RTools43 ...
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Merge pull request #777 from stan-dev/rtools-compat-fixes
Generalise RTools config/support
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Merge pull request #719 from gravesti/posterior_vignette
start posterior vignette
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Merge pull request #778 from stan-dev/loo-moment-match
Add moment-matching support to `$loo()` method
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Bump r-lib/actions from 2.6.3 to 2.6.4
Bumps [r-lib/actions](https://github.com/r-lib/actions) from 2.6.3 to 2.6.4. - [Release notes](https://github.com/r-lib/actions/releases) - [Commits](r-lib/actions@v2.6.3...v2.6.4) --- updated-dependencies: - dependency-name: r-lib/actions dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com>
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Merge pull request #789 from jsocolar/master
replace \ with function
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Merge pull request #786 from stan-dev/dependabot/github_actions/r-lib…
…/actions-2.6.4 Bump r-lib/actions from 2.6.3 to 2.6.4
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document expose_functions method
* rename internal function `expose_stan_functions` (method name still `expose_functions`). Not having identical names makes it easier to document the exposed one in the way we've been doing for other methods. * add doc page for `expose_functions` method
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* now need to use underscore in file name for including the knitr settings (to avoid it being treated as its own vignette) * fix array syntax in a few cases
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temporary work around pkgdown formatting issue with posterior draws_s…
…ummary the hack of using print.data.frame in chunks with echo=FALSE is used because the pillar formatting of posterior draws_summary objects isn't playing nicely with pkgdown::build_articles().
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Merge branch 'next-release' of https://github.com/stan-dev/cmdstanr i…
…nto next-release
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Merge pull request #798 from stan-dev/store-return-codes
Store return codes instead of always querying exit status
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Merge pull request #797 from stan-dev/update-posterior-vignette
Update posterior vignette
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Merge pull request #799 from stan-dev/jacobian-argument
enable jacobian argument for optimization
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Merge pull request #801 from stan-dev/issue-793-model-methods
Fix init_model_methods for models with no data
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