318 update for tes compliance #1221
GitHub Actions / JUnit Test Report
failed
Sep 16, 2024 in 0s
2 tests run, 0 passed, 0 skipped, 2 failed.
Annotations
Check failure on line 1 in Test Process SRATOOLS_FASTERQDUMP
github-actions / JUnit Test Report
Test Process SRATOOLS_FASTERQDUMP.Single-end
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b341db190724a4a54249d2821a1053eb.nf` [gloomy_cori] DSL2 - revision: 93c80db4de
Downloading plugin nf-validation@1.1.3
Downloading plugin nf-amazon@2.8.0
[51/771f49] Submitted process > UNTAR (SRR13255544.tar.gz)
WARN: Process `UNTAR` publishDir path contains a variable with a null value
[55/7066c6] Submitted process > SRATOOLS_FASTERQDUMP (test_single_end)
WARN: Process `SRATOOLS_FASTERQDUMP` publishDir path contains a variable with a null value
Nextflow stderr:
Check failure on line 1 in Test Process SRATOOLS_FASTERQDUMP
github-actions / JUnit Test Report
Test Process SRATOOLS_FASTERQDUMP.Paired-end
Assertion failed:
1 of 2 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-d51f7c9e710f09906b7fc40935dce6f6.nf` [sad_lalande] DSL2 - revision: 1ba0b2e484
[96/b6e065] Submitted process > UNTAR (SRR11140744.tar.gz)
WARN: Process `UNTAR` publishDir path contains a variable with a null value
[36/2c7391] Submitted process > SRATOOLS_FASTERQDUMP (test_paired_end)
WARN: Process `SRATOOLS_FASTERQDUMP` publishDir path contains a variable with a null value
Nextflow stderr:
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