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318 update for tes compliance #1221

318 update for tes compliance

318 update for tes compliance #1221

GitHub Actions / JUnit Test Report failed Sep 16, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: --download_method aspera

Assertion failed: 

1 of 3 assertions failed
Raw output
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-9a9a9677f4ce0035e7db385bc0d084c.nf` [shrivelled_sammet] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[06/7c41f1] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[a4/f2340e] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[f3/ce7b0a] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[57/f044c7] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[29/5c2ad6] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[6c/979049] Submitted process > SRA:ASPERA_CLI (SRX6725035_SRR9984183)
[c3/7e4e64] Submitted process > SRA:ASPERA_CLI (ERX1234253_ERR1160846)
[b4/9683ff] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[0c/c148f3] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[f7/5e8902] Submitted process > SRA:ASPERA_CLI (DRX026011_DRR028935)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[91/d18bdd] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[cc/4903db] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
[09/8a0e02] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr: