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318 update for tes compliance #1221

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318 update for tes compliance

318 update for tes compliance #1221

GitHub Actions / JUnit Test Report failed Sep 16, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

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@github-actions github-actions / JUnit Test Report

nf.Parameters: --nf_core_pipeline rnaseq 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-47ba6ce2b9d272e12d6a519c81aeca6a.nf` [thirsty_swanson] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[dd/6c949e] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[03/d9add5] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[f1/17471e] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[ff/9857ad] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[3b/d0104c] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[a3/32b1c8] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[41/ebd034] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[a6/15a684] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[92/03d90e] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[b7/81c64a] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[9b/26161c] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[50/6607ae] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[3e/fa4456] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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