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318 update for tes compliance #1221

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318 update for tes compliance

318 update for tes compliance #1221

GitHub Actions / JUnit Test Report failed Sep 16, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: --nf_core_pipeline viralrecon 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-e98bf0373b6366d6dcbf2bff024f63cd.nf` [desperate_bassi] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[b9/cc522b] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[7f/5dbf6e] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[c5/9fc28e] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[cf/91dede] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[1d/034c52] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[a1/0af40a] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[12/452241] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[0c/96328e] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[f9/30f382] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[00/c135e4] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[59/81234d] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[f0/30195e] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
[cc/025960] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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