pyiron_base 0.10.2

What's Changed

• Add Docstrings and type hints with Github Co-pilot by @jan-janssen in #1640
• Add more docstrings and type hints by @jan-janssen in #1641
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1642
• Always use absolute path for restart files by @jan-janssen in #1639
• Bump conda-subprocess from 0.0.4 to 0.0.5 by @dependabot in #1644
• Files: Fix windows compatibility by @jan-janssen in #1643
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1645
• Bump sqlalchemy from 2.0.34 to 2.0.35 by @dependabot in #1646
• Update pandas and related dependencies by @jan-janssen in #1647

Full Changelog: pyiron_base-0.10.1...pyiron_base-0.10.2

pyiron_base 0.10.1

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1609
• Catch all exception in pyiron table by @pmrv in #1610
• Fix project mv by @jan-janssen in #1615
• Fix windows paths by @jan-janssen in #1616
• Get executable keys from dataclass fields by @jan-janssen in #1619
• Backwards compatible loading of server/executable by @pmrv in #1611
• [patch] Add pack backwards compatibility tests by @samwaseda in #1617
• Bump executorlib from 0.0.1 to 0.0.2 by @dependabot in #1622
• Merge main by @jan-janssen in #1623
• Revert changes to DataContainer storage format by @pmrv in #1620
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1627
• Remove conda default channel by @jan-janssen in #1628
• Only reset the job status for failed interactive jobs by @jan-janssen in #1631
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1634
• Bump sqlalchemy from 2.0.32 to 2.0.33 by @dependabot in #1636
• Update integration tests and a new one for notebooks by @pmrv in #1637
• Remove automatic recursive to_dict/from_dict again by @pmrv in #1632
• Inspect csv file without uncompressing .tar.gz by @samwaseda in #1629
• Bump sqlalchemy from 2.0.33 to 2.0.34 by @dependabot in #1638
• Bump numpy from 2.1.0 to 2.1.1 by @dependabot in #1635

Full Changelog: pyiron_base-0.10.0...pyiron_base-0.10.1

pyiron_base 0.10.0

What's Changed

• Update pack and unpack methods by @srmnitc in #886
• [patch] Use tempfile instead of creating a directory by @samwaseda in #1555
• Revert "[patch] Use tempfile instead of creating a directory" by @samwaseda in #1556
• [patch] Add warning when the same job is imported multiple times with unpack by @samwaseda in #1596
• [patch] Unify copy_to and move_to by @samwaseda in #1598
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1597
• [patch] Append tag when patch, minor or major is added by @samwaseda in #1599
• [patch] Restructure archive by @samwaseda in #1595
• [patch] Not create tmp file when copying everything by @samwaseda in #1589
• [patch] Use tempfile instead of creating a directory by @samwaseda in #1558
• [patch] Use tempfile to open compressed data by @samwaseda in #1601
• Executable Dataclass by @jan-janssen in #1580
• Server Dataclass by @jan-janssen in #1578
• [minor] Update pack and unpack methods by @samwaseda in #1440
• Bump tables from 3.9.2 to 3.10.1 by @dependabot in #1603
• Bump h5io-browser from 0.0.17 to 0.0.18 by @dependabot in #1606
• Interactive: Set status to aborted when job failed by @jan-janssen in #1604
• [minor] Recursive to/from_dict by @pmrv in #1602
• Update h5io_browser to 0.1.0 by @jan-janssen in #1608
• Add two classes for HasHDF/HasDict compat by @pmrv in #1364
• Update pyfileindex to 0.0.27 by @jan-janssen in #1607
• Bump numpy from 2.0.1 to 2.1.0 by @dependabot in #1605

New Contributors

• @srmnitc made their first contribution in #886

Full Changelog: pyiron_base-0.9.12...pyiron_base-0.10.0

pyiron_base-0.9.12

What's Changed

• Remove empty executable test by @pmrv in #1577
• Use tempfile by @samwaseda in #1570
• Remove send_to_db by @jan-janssen in #1579
• Add docstring to import jobs by @samwaseda in #1583
• Bump tqdm from 4.66.4 to 4.66.5 by @dependabot in #1584
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1587
• Bump sqlalchemy from 2.0.31 to 2.0.32 by @dependabot in #1588
• Allow undefined pack destination by @samwaseda in #1581
• Only create temp_dir when compress=True by @samwaseda in #1582
• No copy directory by @samwaseda in #1585
• Bump pyiron-snippets from 0.1.3 to 0.1.4 by @dependabot in #1591
• not use relpath by default by @samwaseda in #1590
• Rewrite tests for pack by @samwaseda in #1593

Full Changelog: pyiron_base-0.9.11...pyiron_base-0.9.12

pyiron_base-0.9.11

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1547
• Enable Python 3.9 tests again by @jan-janssen in #1548
• Use copytree in pack by @samwaseda in #1549
• Restore sub directories by @samwaseda in #1551
• Refactor and add doc string (done by ChatGPT) by @samwaseda in #1550
• Update pyfileindex to 0.0.26 and h5io_browser to 0.0.17 by @jan-janssen in #1554
• Change wrap function status when job starts running by @samwaseda in #1560
• Add a series of docstrings and type hints with github co-pilot by @jan-janssen in #1561
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1564
• Fix nfdi usecase tests failing by @jan-janssen in #1566
• Bump monty from 2024.7.12 to 2024.7.30 by @dependabot in #1565
• Add underscore to separate job name by @samwaseda in #1567
• Merge main by @jan-janssen in #1569
• Debug failing minimal tests by @jan-janssen in #1575
• Add deprecate warnings when indexing jobs directly by @pmrv in #1562
• Merge main by @jan-janssen in #1576
• Set job.status.running again by @pmrv in #1573
• delete extraction function because it became very short and give an e… by @samwaseda in #1571
• Always write input files by @pmrv in #1574

Full Changelog: pyiron_base-0.9.10...pyiron_base-0.9.11

pyiron_base-0.9.10

What's Changed

• Bump pyiron-snippets from 0.1.2 to 0.1.3 by @dependabot in #1536
• Merge main by @jan-janssen in #1545
• [patch] Remove redundant conversion of project name by @samwaseda in #1543
• [patch] Refactor compress dir by @samwaseda in #1544
• Use resolver classes from pyiron_snippets by @pmrv in #1528

Full Changelog: pyiron_base-0.9.9...pyiron_base-0.9.10

pyiron_base 0.9.9

What's Changed

• Bugfix: Interactive calculation array comparison by @jan-janssen in #1542

Full Changelog: pyiron_base-0.9.8...pyiron_base-0.9.9

pyiron_base 0.9.8

What's Changed

• Add optional dependencies: gitpython, jinja2 and pint by @jan-janssen in #1537
• Fix install dependencies by @jan-janssen in #1538
• Fix multi dimensional arrays with FlattenedStorage.to_pandas by @pmrv in #1335
• Remove Codacy by @jan-janssen in #1540
• Update h5io_browser to 0.0.16 by @jan-janssen in #1541

Full Changelog: pyiron_base-0.9.7...pyiron_base-0.9.8

pyiron_base 0.9.7

What's Changed

• Update conda-incubator/setup-miniconda from v2 to v3 by @jan-janssen in #1517
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1519
• Refactor tests by @jan-janssen in #1520
• Add usecases to the tests by @jan-janssen in #1521
• NFDI use case: Remove plotting the graph by @jan-janssen in #1522
• Update conda to 24.5.0 by @jan-janssen in #1524
• ADIS usecase - update notebook by @jan-janssen in #1525
• Update NFDI4Ing usecase update by @jan-janssen in #1526
• Update usecases to Python 3.12 by @jan-janssen in #1527
• Bump pint from 0.24.1 to 0.24.3 by @dependabot in #1532
• Bump monty from 2024.5.24 to 2024.7.12 by @dependabot in #1530
• Bump pympipool from 0.8.5 to 0.9.1 by @dependabot in #1531
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1534
• wrap_executable(): no longer require job_name - enable automatic renaming by @jan-janssen in #1529

Full Changelog: pyiron_base-0.9.6...pyiron_base-0.9.7

pyiron_base 0.9.6

What's Changed

• Update dependabot.yml by @jan-janssen in #1501
• Bump conda-subprocess from 0.0.2 to 0.0.4 by @dependabot in #1502
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #1504
• TemplateJob: Implement to_dict() and from_dict() by @jan-janssen in #1507
• wrap_python_function(): Allow calling the function directly by @jan-janssen in #1506
• Add import sorting to ruff by @jan-janssen in #1512
• ExecutableContainerJob: Fix copying of restart files by @jan-janssen in #1509
• PythonFunctionContainerJob: Skip the run() call for jobs which were reloaded during save() by @jan-janssen in #1514
• Delayed execution in pyiron_base - for wrap_python_function() and wrap_executable() by @jan-janssen in #1508
• Add write_input() before transferring files to remote by @jan-janssen in #1511
• Executable: drop old code argument by @pmrv in #1513
• Rename the result() call to pull() - for consistency with pyiron_workflow by @jan-janssen in #1515

Full Changelog: pyiron_base-0.9.5...pyiron_base-0.9.6