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Dev -> Master for v2.7.2 #2136

Merged
merged 51 commits into from
Dec 19, 2022
Merged

Dev -> Master for v2.7.2 #2136

merged 51 commits into from
Dec 19, 2022

Commits on Dec 8, 2022

  1. bump to v2.8dev

    @mirpedrol
    mirpedrol committed Dec 8, 2022
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  2. Merge pull request #2113 from mirpedrol/2.8dev 

    bump to v2.8dev
    @mirpedrol
    mirpedrol committed Dec 8, 2022
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  3. Merge branch 'master' of https://github.com/nf-core/tools into dev

    @mirpedrol
    mirpedrol committed Dec 8, 2022
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  4. fix github_output syntax

    @mirpedrol
    mirpedrol committed Dec 8, 2022
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  5. update changelog

    @mirpedrol
    mirpedrol committed Dec 8, 2022
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Commits on Dec 9, 2022

  1. Merge pull request #2114 from mirpedrol/github-output 

    fix github_output syntax on GHA
    @mirpedrol
    mirpedrol committed Dec 9, 2022
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  2. Return from get_username and make sure it is assigned back to self.au… 

    …thor
    @awgymer
    awgymer committed Dec 9, 2022
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  3. allow specifying only one container

    @mirpedrol
    mirpedrol committed Dec 9, 2022
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  4. modify changelog

    @mirpedrol
    mirpedrol committed Dec 9, 2022
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  5. Merge pull request #2120 from awgymer/fix-component-author 

    Ensure component author is properly captured and stored
    @awgymer
    awgymer committed Dec 9, 2022
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  6. Ensure call to load_tools_config expects tuple return

    @awgymer
    awgymer committed Dec 9, 2022
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Commits on Dec 12, 2022

  1. Merge pull request #2122 from awgymer/fix-lint-pipeline-name 

    Fix lint pipeline name
    @awgymer
    awgymer committed Dec 12, 2022
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  2. check only one container per line

    @mirpedrol
    mirpedrol committed Dec 12, 2022
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  3. Merge branch 'dev' of https://github.com/nf-core/tools into dev

    @mirpedrol
    mirpedrol committed Dec 12, 2022
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  4. only check pipeline name without dashes if the name is provided by pr… 

    …ompt
    @mirpedrol
    mirpedrol committed Dec 12, 2022
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  5. Merge pull request #2121 from mirpedrol/dev 

    allow specifying only one container
    @mirpedrol
    mirpedrol committed Dec 12, 2022
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  6. Merge branch 'dev' of https://github.com/nf-core/tools into dev

    @mirpedrol
    mirpedrol committed Dec 12, 2022
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  7. Merge branch 'dev' of https://github.com/mirpedrol/tools into dashed-… 

    …name
    @mirpedrol
    mirpedrol committed Dec 12, 2022
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  8. run prettier after dumping a json schema file

    @mirpedrol
    mirpedrol committed Dec 12, 2022
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  9. modify changelog

    @mirpedrol
    mirpedrol committed Dec 12, 2022
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  10. update changelog

    @mirpedrol
    mirpedrol committed Dec 12, 2022
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Commits on Dec 13, 2022

  1. Merge pull request #2123 from mirpedrol/dashed-name 

    only check pipeline name without dashes if the name is provided by prompt
    @ewels
    ewels committed Dec 13, 2022
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  2. add newline before table 🤞🏻

    @mashehu
    mashehu committed Dec 13, 2022
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  3. Update README.md 

    Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
    @mashehu @ewels
    mashehu and ewels committed Dec 13, 2022
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  4. [automated] Fix code linting

    @nf-core-bot
    nf-core-bot committed Dec 13, 2022
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  5. Update README.md

    @mashehu
    mashehu committed Dec 13, 2022
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  6. Merge pull request #2128 from mashehu/fix-table-in-readme 

    add newline before table 🤞🏻
    @mashehu
    mashehu committed Dec 13, 2022
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  7. Apply suggestions from code review 

    Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
    @mirpedrol @ewels
    mirpedrol and ewels committed Dec 13, 2022
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Commits on Dec 14, 2022

  1. merge branch dev

    @mirpedrol
    mirpedrol committed Dec 14, 2022
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  2. add json.dump into a helper function

    @mirpedrol
    mirpedrol committed Dec 14, 2022
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Commits on Dec 15, 2022

  1. Merge pull request #2124 from mirpedrol/prettier-json-schema 

    run prettier after dumping a json schema file
    @mirpedrol
    mirpedrol committed Dec 15, 2022
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  2. remove params.enable_conda

    @mirpedrol
    mirpedrol committed Dec 15, 2022
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  3. add params.enable_conda to deprecated vars

    @mirpedrol
    mirpedrol committed Dec 15, 2022
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  4. update CHANGELOG

    @mirpedrol
    mirpedrol committed Dec 15, 2022
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  5. update pipeline template modules

    @mirpedrol
    mirpedrol committed Dec 15, 2022
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  6. fix test

    @mirpedrol
    mirpedrol committed Dec 15, 2022
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  7. fix test

    @mirpedrol
    mirpedrol committed Dec 15, 2022
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  8. Revert unique() syntax change. Closes #2132

    @ewels
    ewels committed Dec 15, 2022
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Commits on Dec 16, 2022

  1. Merge pull request #2133 from ewels/revert-unique-change

    @ewels
    ewels committed Dec 16, 2022
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  2. Merge branch 'dev' of https://github.com/nf-core/tools into handle-js… 

    …on-exception
    @mirpedrol
    mirpedrol committed Dec 16, 2022
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  3. handle json exception

    @mirpedrol
    mirpedrol committed Dec 16, 2022
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  4. handle all json-load exceptions

    @mirpedrol
    mirpedrol committed Dec 16, 2022
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  5. update CHANGELOG

    @mirpedrol
    mirpedrol committed Dec 16, 2022
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  6. remove handling from linting as it's already handled later

    @mirpedrol
    mirpedrol committed Dec 16, 2022
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  7. Merge branch 'dev' of https://github.com/nf-core/tools into conda-enable

    @mirpedrol
    mirpedrol committed Dec 16, 2022
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  8. check conda channels as it's done in rnaseq

    @mirpedrol
    mirpedrol committed Dec 16, 2022
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  9. remove params.enable_conda from modules template

    @mirpedrol
    mirpedrol committed Dec 16, 2022
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  10. Merge pull request #2131 from mirpedrol/conda-enable 

    Remove params.enable_conda
    @drpatelh
    drpatelh committed Dec 16, 2022
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Commits on Dec 17, 2022

  1. Merge pull request #2134 from mirpedrol/handle-json-exception 

    Handle json.load() exceptions
    @mirpedrol
    mirpedrol committed Dec 17, 2022
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Commits on Dec 19, 2022

  1. bump to 2.7.2 for patch release

    @mirpedrol
    mirpedrol committed Dec 19, 2022
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  2. Merge pull request #2135 from mirpedrol/bump-2.7.2 

    Bump to 2.7.2
    @mirpedrol
    mirpedrol committed Dec 19, 2022
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