subworkflows_vcf_readcount_annotator.cwl

Documentation for vcf_readcount_annotator.cwl

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Overview

Add snv and indel bam-readcount files to a vcf

Inputs

Name	Label	Description	Type	Secondary Files
vcf			File	['.tbi']
snv_bam_readcount_tsv			File
indel_bam_readcount_tsv			File
data_type			[{'type': 'enum', 'symbols': ['DNA', 'RNA']}]
sample_name			string

Outputs

Name	Label	Description	Type	Secondary Files
annotated_bam_readcount_vcf			File

Steps

Name	CWL Run
add_snv_bam_readcount_to_vcf	tools/vcf_readcount_annotator.cwl
add_indel_bam_readcount_to_vcf	tools/vcf_readcount_annotator.cwl