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Wednesday, October 24, 2018 RNASeq I

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Meg Staton edited this page Oct 24, 2018 · 4 revisions

Class work

Slides
RNASeq I practical - RNASeq mapping & alignment visualization
- Download RStudio for next session

Toggle table of contents Pages 101

Home
2016 Course wiki page
2018 HW7
ACF queue submissions
Applications of DNA sequencing Python Lab IV
Assembly Challenge
Assembly Practical
Bioinformatics Shell Lab II
BioPython
BLAST practical
Create a handy shortcut for logging in so you don't have to type as much
Day 1 Review
Differential Expression Statistics RNASeq Lab II
DNA Seq I practical demo
DNA Seq II
DNASeq II practical
DNASeq III Practical
DNASeqI Practical
E coli inversion experiment
EUtils practical demo
Exploring Files
Final presentation schedule
Final project details
Final Project Instructions
Finding things
Finish up variant calling
Functional Annotation with HMMs RNASeq Lab IV
Genome Assembly DNASeq Lab III
GitHub
HPC Resources and Newton Shell Lab III
HW1
HW1 solution
HW2
HW2 solution
HW3
HW3 solution
HW4
HW4 solution
HW5
HW5 2018
HW6
HW6 2018
HW7
IGV
IGV Biopython Lab
Instruction of alignment visualization by IGV
Introduction to Linux Shell Lab I
Lesson10CatchUp
Lesson11CatchUp
Lets practice a BLAST shell script
Loops
Metagenomics and 16S Amplicon Sequencing 16S Lab I
Monday, August 27, 2018 Shell I
Monday, November 5, 2018
Monday, October 1, 2018 DNASeq IV
Monday, October 15, 2018 Python II
Monday, October 22, 2018 Python IV
Monday, October 22, 2018 RNASeq I
Monday, October 29, 2018 RNASeq II
Monday, October 29, 2018 RNASeq III
Monday, October 29, 2018 RNASeq II
Monday, September 10, 2018 BLAST
Monday, September 17, 2018 Shell Test
Monday, September 24, 2018 DNASeq II
Mothur Mouse 16S
Newton Jobs
Newton Modules
Newton MPI EC opportunity instead
Online resources and databases Python Lab II
Overview of high throughput sequencing Python Lab III
Pairwise sequence alignments & BLAST BLAST Lab
RNASeq I practical RNASeq mapping & alignment visualization
RNASeq I Qsub script
RNASeq II practical Count reads and differential expression analysis
RNASeq III practical Transcriptome Assembly
RNASeq Lab I: RNASeq alignments
RNASeq Lab I: RNASeq alignments with different aligners or mappers
Shell scripts
Short Read QC and Mapping DNASeq Lab I
software install notes
SRA Toolkit practical demo
Study Guide for Test 1
Study Guide for Test 2
Test 2 Study Guide
Transcriptome Assembly RNASeq Lab III
Unix Shell IV Python Lab I
Variant Calling and Visualization DNASeq Lab II
Version Control with Github 16S Lab II
Wednesday, August 19, 2018 Shell II
Wednesday, August 22nd, 2018 Introduction ACF Registration
Wednesday, August 29, 2018 Shell II
Wednesday, November 7, 2018
Wednesday, October 10, 2018 Python Intro & Python I Practical
Wednesday, October 17, 2018 Python III
Wednesday, October 24, 2018 RNASeq I
- Class work
Wednesday, October 3, 2018 DNASeq V
Wednesday, October 31, 2018 RNASeq III
Wednesday, September 12, 2018 Shell V
Wednesday, September 19, 2018 DNASeq I
Wednesday, September 26, 2018 DNASeq III
Wednesday, September 5, 2018 Shell IV

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