Release v1.1.0 #1092
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Release v1.1.0 #1092
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* build: updates version number * feat: adds qc schema json * fix: updates schema version check to handle new core schemas * ci: adds service account token to github actions * bump schema version [skip actions] * fix: updates broken github action * bump schema version [skip actions] * build: increments version to 1.0.0 * build: sets core metadata schema to v1.0.0 --------- Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
* added EMGInsertion * lint * one_of * chore: lint * fix: removing ONE_OF calls for Union types * changed name --------- Co-authored-by: Dan Birman <danbirman@gmail.com>
#1041) * chore: making all use of Field(default=None) consistent for Optional fields * chore: lint
* added Side * midline * schema version
…figures (#1037) * feat: refactor qc_metrics to a List of metrics, with additional metadata * fix: replace AindGenericType with typing.Any * feat/tests: making references optional but name required, fixing typo, trying to fix tests * tests: fixing broken quality_control example + tests * fix: add default= for Optional fields * tests: changing how examples are generated * refactor: QC.Stage and adding _name and _desc fields * fix: no shortened names, lint * chore: missed name changes
* fixed lick sensor * lint * updated reward spounts in rig session compat test * fixed name for daq channels * lint * lick sensor required * fip_ophys_rig example * test_device update * updated models
* Remove redundant discriminator * Fix type signature and length constrain * Linting * chore: un-capping pydantic version * Revert "chore: un-capping pydantic version" This reverts commit 2f81eda. --------- Co-authored-by: Dan Birman <danbirman@gmail.com>
* Update quality_control.py * tests: fixing tests * tests: one more missing test
* feat: adding flake8 extension that checks for default= and ... Still needs work, this catches situations that it shouldn't catch * chore: missing default= * chore: realized there is a special linters section
* refactor: changing references -> reference * feat: add an overall evaluator name * feat: adding QCStatus and lists of status for versioning * chore: lint * tests: updating tests for QCStatus
* chore: un-cap pydantic version * fix: increasing pydantic floor to avoid model_construct() + Union issues * fix: specify versions to ignore * fix: moving version limits to [dev]
* docs: adding draft QC docs * docs: adding more qc docs * feat: add myst_parser and qc to index * refactor: replace .rst file with .md * docs: adding information about reference URLs * docs: separating portal information into an AIND section * docs: cleaning up documentation for qc * docs: more cleanup on qc docs * docs: small updates to docs based on discussion about credentials * docs: updating qc docs based on discussion * docs: cleaning up docs and clarifying in a few spots
* feat: adding optional ResourceUsage to DataProcess * tests: adding example * refactor: adding ResourceTimestamped * chore: remove timeunit * tests: adding tests * fix: missing Field() * chore: lint * chore: lint * tests: examples * chore: lint * refactor: date->datetime and usage_unit * chore: update processing example * chore: lint * fix: datetime -> AwareDatetime * refactor: rename memory to system_memory * chore: lint * tests: force timezones to utc for CI * fix: timezone issue for tests * refactor: remove MemoryValue and add validators for Optional unit fields * refactor: remove file_io * chore: lint * chore: lint * refactor: remove file_io * refactor: clean up validators into a single root validator * chore: lint * tests: fix examples, also allow float memory sizes * tests: update example file * chore: lint
…sed on metric states (#1074) * refactor: changing references -> reference * feat: add an overall evaluator name * feat: adding QCStatus and lists of status for versioning * chore: lint * tests: updating tests for QCStatus * feat: add QCStatus list to metrics * feat: adding a function to automate setting the evaluation_status field Coverage not at 100% yet Also replaced date with datetime in QCStatus * test: test coverage for overall_status * test: add coverage for properties * refactor: date -> datetime * chore: lint * doc: missing docstrings * tests: remove unnecessary test * feat: auto-set status when never previously evaluated, and tests * fix: fixing an issue with private attributes You can't do what I wanted (hide the _evaluation_status list) because pydantic doesn't serialize the field. So we have to keep the history exposed but we'll have to encourage people not to access it directly * chore: example and lint * fix: removing default_factory, trying to allow timestamp pass through * test: fixing examples test timestamp issue * chore: lint * refactor: datetime -> AwareDatetime and remove default * tests: add a test that confirms that order is preserved * fix: missing timezones for example * feat: add option to allow failures in metrics * feat: add a convenience function to get metrics that are failing * tests: update qc.json example * feat: ensure metric_status_history not empty with validator * chore: docstring * test: improving examples * chore: lint * feat: add asset_id field to qc * tests: fix examples * tests: fix examples * docs: extended desc for allowing failed metrics * feat: removing prefixes to clean up fields * feat: remove property prefixes * chore: lint * chore/tests: lint and fix examples * tests: fix refactor issues in tests * docs: fix typo * chore: unused import snuck in? * fix: allow none to return from failed_metrics * ci: fix for python 3.8 failures * fix: remove the confusing "Automated" evaluator * tests: fix qc example * refactor: removing redundant status_history from QualityControl and QCEvaluation * fix: forgot to remove redundant fields * tests: fix examples
* chore: version bump for schemas * tests: example updates
Main merge v110
jtyoung84
approved these changes
Oct 4, 2024
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