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Separate all tagged functors in GMLS class into separate structs/functors #257

Merged
merged 59 commits into from
Nov 1, 2021
Merged

Separate all tagged functors in GMLS class into separate structs/functors #257

merged 59 commits into from
Nov 1, 2021

Commits on Oct 5, 2021

  1. Test to separate functors from GMLS class

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  2. Converted assemble and apply for standard problems to separate functors

    @kuberry
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  3. Converted ComputePrestencilWeights to separate struct

    @kuberry
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Commits on Oct 13, 2021

  1. Added struct for holding functor data and added TeamPolicy creator

    @kuberry
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  2. Created GMLSBasisData struct with all GMLS member variables 

    Switched ComputePrestencil functor to use this struct for non-member
function calls to GMLS
    @kuberry
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  3. Add PointConnections class

    @kuberry
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  4. Converted GMLS class to using PointConnections

    @kuberry
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Commits on Oct 14, 2021

  1. Converted additional evaluation sites over to using PointConnections

    @kuberry
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  2. Merge branch 'point_connectivity' into separate_functors

    @kuberry
    kuberry committed Oct 14, 2021
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  3. Comment out print statement

    @kuberry
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  4. Moved Basis operations out of GMLS class 

    - Removed getNNeighbors and getMaxNNeighbors from GMLS class, now
  everything uses neighbor lists directly to get this information
- Changed Compadre_GMLS_Basis.hpp to Compadre_Basis.hpp, as its
  assembly routines are more general than GMLS
- Modified all other parts of GMLS calls to Basis functionality to
  agree with functions external to the GMLS class
    @kuberry
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  5. Moved Target operations out of GMLS class

    @kuberry
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  6. Changed captures from = to &

    @kuberry
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  7. Change more captures from = to &

    @kuberry
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  8. Switched ComputePrestencilWeights and AssembleStandardPsqrtW to only … 

    …using GMLSBasisData
    @kuberry
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  9. Continue switching from _gmls to _data in ApplyStandardTargets

    @kuberry
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Commits on Oct 18, 2021

  1. Extracted all _alpha values and functionality to SolutionSet class

    @kuberry
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Commits on Oct 19, 2021

  1. Added missing _h_ss setting of neighbor lists

    @kuberry
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  2. Add updates to _h_ss for _max_evaluation_sites_per_target

    @kuberry
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  3. Fixed incorrect data sampling functional being used in dimension calc… 

    …ulation
    @kuberry
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  4. Change return type of SolutionSet from GMLS, resize _lro* vectors on … 

    …copy
    @kuberry
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  5. Three main functors all converted to using GMLSBasisData

    @kuberry
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  6. Make getSolutionSetHost() check _alpha size and selectively perform copy

    @kuberry
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Commits on Oct 20, 2021

  1. Replaced with Z

    @kuberry
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  2. Separated ApplyStandardTargets into EvaluateStandardTarget and ApplyS… 

    …tandardTargets
    @kuberry
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  3. Returned variables in GMLS class back to private 

    - Private variables needing copied are handled by their data
  struct being friended to the GMLS class
    @kuberry
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  4. Converted all remaining manifold tags to functors

    @kuberry
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  5. Moved functor data generation to inside of batch loop

    @kuberry
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  6. Make point_connections_type typedef in GMLS class public 

    - Also reorganized GMLSBasisData struct members
    @kuberry
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  7. Changed KOKKOS_LAMBDA to [&] for private members in GMLS

    @kuberry
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  8. Clean up applyTargetsToCoefficients signature

    @kuberry
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  9. Updated doxygen

    @kuberry
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  10. Convert SolutionSet to struct (all members were public anyways) 

    - Updated doxygen on member functions
    @kuberry
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Commits on Oct 21, 2021

  1. Converting to using precomputed quantities

    @kuberry
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  2. Converting to using precomputed quantities (2)

    @kuberry
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  3. Converting to using precomputed quantities (3)

    @kuberry
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  4. Completed converting to using precomputed quantities 

    - Removed need for a lot of the scratch space allocation
- Reused the ApplyTargets functor for the manifold case
    @kuberry
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  5. Reduce GMLSSolutionData struct size and make PointConnections and Nei… 

    …ghborLists into structs
    @kuberry
    kuberry committed Oct 21, 2021
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  6. Update to reflect template

    @kuberry
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  7. Removed parallel reduction in ApplyTargets for CPU (speedup)

    @kuberry
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  8. Add description for _Z

    @kuberry
    kuberry committed Oct 21, 2021
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  9. Changed getSolutionSetHost to _h_ss in Evaluator

    @kuberry
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Commits on Oct 22, 2021

  1. Change reference type for getSolutionSet in pycompadre and fixed _lro… 

    …_lookup
    @kuberry
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  2. Embedded ActualReconstructionSpaceRank in getActualReconstructionSpac… 

    …eRank

- Did the same for TargetOutputTensorRank
- Reason for change is that 11.3 of cuda doesn't recognize constexpr
  int array is accessible from device
    @kuberry
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  3. Make Kokkos_CXX_STANDARD consistent with Compadre's

    @kuberry
    kuberry committed Oct 22, 2021
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Commits on Oct 23, 2021

  1. Improved template for indexing in SolutionSet 

    - Removed GMLS destructor (not needed)
    @kuberry
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  2. Moved all functor definitions to Compadre_Functors.hpp

    @kuberry
    kuberry committed Oct 23, 2021
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  3. Made some reused variables const

    @kuberry
    kuberry committed Oct 23, 2021
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  4. Removed PerThread in ApplyTargets

    @kuberry
    kuberry committed Oct 23, 2021
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  5. Rearranged parallel_for location for GPU ApplyTargets

    @kuberry
    kuberry committed Oct 23, 2021
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  6. Switch back to CMAKE_CXX_STD 11, even for GPU (consistent with Kokkos… 

    … version included)
    @kuberry
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Commits on Oct 25, 2021

  1. GPU thread level defaults to 0 instead of 1 now

    @kuberry
    kuberry committed Oct 25, 2021
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  2. Initialized a previously uninitialized value

    @kuberry
    kuberry committed Oct 25, 2021
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Commits on Oct 28, 2021

  1. Replace TeamThreadRange with for loop for thread scratch memory

    @kuberry
    kuberry committed Oct 28, 2021
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  2. Replace another TeamThreadRange with for loop and add kernel to assert

    @kuberry
    kuberry committed Oct 28, 2021
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Commits on Oct 29, 2021

  1. Initialize alphas to zero 

    - If not set to zero, possible to be read in and used by Evaluator
  uninitialized (NaNs)
    @kuberry
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  2. Change some const ints to nonconst because of gcc 7.2 issue

    @kuberry
    kuberry committed Oct 29, 2021
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Commits on Oct 31, 2021

  1. Refactored std::vector in SolutionSet

    @kuberry
    kuberry committed Oct 31, 2021
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Commits on Nov 1, 2021

  1. Bump Compadre Toolkit to version 1.4.0 

    - All functors extracted from GMLS class
- Add SolutionSet struct
- Add PointConnections struct
    @kuberry
    kuberry committed Nov 1, 2021
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