Update base modification test files to use the final MM/ML tags #776
+118
−13
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Change the test files so they use
MM:Z
andML:B:C
in their final capitalised forms.Also add HTSlib's MM-explicit.sam, which exercises the skipped bases modification state indicator character, and add an example
MN:i
field to MM-multi.sam, to keep it in sync with HTSlib's copy.This is fairly trivial so should be able to be merged quickly.