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Default registry to quay.io #3344

Merged
merged 21 commits into from
May 2, 2023
Merged

Default registry to quay.io #3344

merged 21 commits into from
May 2, 2023

Commits on Apr 27, 2023

  1. Add default registry for Docker and Podman to quay.io 

    Will break any non quay.io containers that were not specified with a
full URI
    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  2. Use full URI for all modules

    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  3. Merge branch 'master' into default_registry_to_quay.io

    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  4. More docker.io added to container specs

    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  5. More docker.io

    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  6. Correct docker container for VEP

    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  7. Artifacts named after specific run 

    Changes:
 - Name the upload after the specific tool that was analysed using the
   tag value
 - Reduces download size of artifacts when investigating failures
    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  8. Update universc image name to use nfcore/universc instead of bioconta… 

    …iners/universc
    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  9. Revert snpeff docker container to nfcore/snpeff

    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  10. Update cellranger/count md5sum tests

    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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  11. Remove eido md5sum because it doesn't work on conda

    @adamrtalbot
    adamrtalbot committed Apr 27, 2023
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Commits on Apr 28, 2023

  1. Fix eido version string

    @adamrtalbot
    adamrtalbot committed Apr 28, 2023
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  2. correct md5sums

    @adamrtalbot
    adamrtalbot committed Apr 28, 2023
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  3. Omit gatk4 conda tools that don't work

    @adamrtalbot
    adamrtalbot committed Apr 28, 2023
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  4. Remove slashes from tags for uploading artifacts

    @adamrtalbot
    adamrtalbot committed Apr 28, 2023
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  5. bb22faef28dfb0b3b106bd5cc320bf09

    @adamrtalbot
    adamrtalbot committed Apr 28, 2023
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  6. Correct string parsing for artifact upload

    @adamrtalbot
    adamrtalbot committed Apr 28, 2023
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  7. Remove singularity gatk4/determinegermlinecontigploidy test because i… 

    …t just breaks the VM after too long
    @adamrtalbot
    adamrtalbot committed Apr 28, 2023
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  8. Merge branch 'master' into default_registry_to_quay.io

    @adamrtalbot
    adamrtalbot committed Apr 28, 2023
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  9. fix-meta-liniting

    @sateeshperi
    sateeshperi committed Apr 28, 2023
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Commits on May 2, 2023

  1. Merge remote-tracking branch 'sateesh/fix/v2.8-meta-linting-errors' i… 

    …nto default_registry_to_quay.io
    @adamrtalbot
    adamrtalbot committed May 2, 2023
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