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318 update for tes compliance #1025

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318 update for tes compliance

318 update for tes compliance #1025

GitHub Actions / JUnit Test Report failed Sep 16, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: --nf_core_pipeline atacseq 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b770e146303f25e478e00e5aed7bbe13.nf` [focused_golick] DSL2 - revision: 68dcf2aadf
Downloading plugin nf-validation@1.1.3
[40/5be427] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[c4/e6687d] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[fb/d22413] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[36/42ff78] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[25/f4bc58] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[6a/d527da] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[c6/c4e8cb] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[2c/feaf03] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[4d/3e7737] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[bb/b88aa5] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[29/407d27] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[9f/0149e8] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[3b/7438be] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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