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318 update for tes compliance #1025

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318 update for tes compliance

318 update for tes compliance #1025

Triggered via pull request September 16, 2024 18:54
@vsmalladivsmalladi
synchronize #320
318-update-for-tes-compliance
Status Failure
Total duration 22m 7s
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ci.yml

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109 errors and 59 warnings
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_IDS_TO_RUNINFO.Should run without failures: Test process: SRA_IDS_TO_RUNINFO#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_IDS_TO_RUNINFO.Should run without failures: Test process: SRA_IDS_TO_RUNINFO#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_RUNINFO_TO_FTP.Should run without failures: Test process: SRA_RUNINFO_TO_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_FASTQ_FTP.Should run without failures: Test process: SRA_FASTQ_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
Test process: SRA_FASTQ_FTP.Should run without failures: Test process: SRA_FASTQ_FTP#L1
Assertion failed: 1 of 2 assertions failed
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 1 of 3 assertions failed
Test Process CUSTOM_SRATOOLSNCBISETTINGS.Should run without failures: Test Process CUSTOM_SRATOOLSNCBISETTINGS#L1
java.lang.RuntimeException: Different Snapshot: --- /tmp/expected5896164903367639580jso +++ /tmp/found4801158972599457677json n @@ -1,5 @@ @@ +1,5 @@ 1 [ 1 [ 2 [ 2 [ ! 3 "versions.yml:md5,bc8238c8f ! 3 "versions.yml:md5,3d6ee88cc cfbd7d5d4d32614fcf0027a" e1ee517e198633f062589a8" 4 ] 4 ] 5 ] 5 ]
nf.Parameters: default: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 1 of 3 assertions failed
Test Process CUSTOM_SRATOOLSNCBISETTINGS.Should run without failures: Test Process CUSTOM_SRATOOLSNCBISETTINGS#L1
java.lang.RuntimeException: Different Snapshot: --- /tmp/expected11729849648546463499js +++ /tmp/found6246651992546007024json on @@ -1,5 @@ @@ +1,5 @@ 1 [ 1 [ 2 [ 2 [ ! 3 "versions.yml:md5,bc8238c8f ! 3 "versions.yml:md5,3d6ee88cc cfbd7d5d4d32614fcf0027a" e1ee517e198633f062589a8" 4 ] 4 ] 5 ] 5 ]
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 1 of 3 assertions failed
Test process: ASPERA_CLI.Should run without failures: Test process: ASPERA_CLI#L1
Assertion failed: 1 of 2 assertions failed
modules/local/sra_ids_to_runinfo/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/sra_ids_to_runinfo/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/sra_ids_to_runinfo/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/sra_ids_to_runinfo/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 1 of 3 assertions failed
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: default: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-23.04
Process completed with exit code 1.
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 1 of 3 assertions failed
Test process: ASPERA_CLI.Should run without failures: Test process: ASPERA_CLI#L1
Assertion failed: 1 of 2 assertions failed
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/aspera_cli/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/local/aspera_cli/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-23.04
Process completed with exit code 1.
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 1 of 3 assertions failed
modules/local/aspera_cli/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/local/aspera_cli/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
Test Process SRATOOLS_PREFETCH.sratools/prefetch: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch with sralite: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch/stub: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 1 of 3 assertions failed
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-23.04
Process completed with exit code 1.
Test Process SRATOOLS_PREFETCH.sratools/prefetch: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch with sralite: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_PREFETCH.sratools/prefetch/stub: Test Process SRATOOLS_PREFETCH#L1
Assertion failed: 1 of 2 assertions failed
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-latest-everything
Process completed with exit code 1.
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 1 of 3 assertions failed
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 1 of 3 assertions failed
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-latest-everything
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-23.04
Process completed with exit code 1.
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-23.04
Process completed with exit code 1.
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Paired-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-latest-everything
Process completed with exit code 1.
Test Process SRATOOLS_FASTERQDUMP.Single-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
Test Process SRATOOLS_FASTERQDUMP.Paired-end: Test Process SRATOOLS_FASTERQDUMP#L1
Assertion failed: 1 of 2 assertions failed
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-23.04
Process completed with exit code 1.
confirm-pass
Process completed with exit code 1.
Check for changes
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_to_samplesheet/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_to_samplesheet/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_completion.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_ids_to_runinfo/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_ids_to_runinfo/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.workflow.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_runinfo_to_ftp/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/multiqc_mappings_config/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/sra_fastq_ftp/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.workflow.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/untar/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_skip_fastq_download.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/untar/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nfvalidation_plugin/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nextflow_pipeline/tests/main.function.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/aspera_cli/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/local/utils_nfcore_fetchngs_pipeline/tests/main.function.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/local/aspera_cli/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/utils_nfcore_pipeline/tests/main.function.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_aspera.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/sratools/prefetch/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
workflows/sra/tests/sra_download_method_sratools.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
subworkflows/nf-core/fastq_download_prefetch_fasterqdump_sratools/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
modules/nf-core/sratools/fasterqdump/tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/main.nf.test docker NF-23.04
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
tests/main.nf.test docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, actions/cache@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/