Apply formatting changes from code review

[SusiJo]

Many thanks to contributing to nf-core/bamtofastq!

Please fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).

PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!
• If necessary, add test data to testdata/
• Ensure the test suite passes (nextflow run . -profile test,docker).
• Make sure your code lints (nf-core lint .).
• Documentation in docs is updated
• CHANGELOG.md is updated
• README.md is updated

Learn more about contributing: https://github.com/qbic-pipelines/bamtofastq/tree/master/.github/CONTRIBUTING.md

[SusiJo]

Linting is expected to fail, because the Contributing.md differs from the pipeline template. However, the pipeline template of nf-core/tools version 2.8 is outdated as it lists a Dockerfile which should not be there anymore.

[JoseEspinosa]

Awesome! 🚀

[JoseEspinosa]

Linting is expected to fail, because the Contributing.md differs from the pipeline template. However, the pipeline template of nf-core/tools version 2.8 is outdated as it lists a Dockerfile which should not be there anymore.

Adding this to the .nf-core.yml should do the trick:

lint:
  files_unchanged:
    - .github/CONTRIBUTING.md

See here

[SusiJo]

Thanks @JoseEspinosa!