Benchmarking bioscrape performance #159
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WilliamIX
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Jan 27, 2023
WilliamIX
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Updates in version 1.2.1: * Fixes advanced examples notebook (Fix advanced examples notebook #154) * Adds contributing.md (Add contributing.md #158) * Adds bioscrape simulation comparison (Benchmarking bioscrape performance #159) * Installation via python setup.py install replaced with pip install. * New contributor guidelines.
ayush9pandey
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Feb 25, 2023
Updates in version 1.2.1: * Fixes advanced examples notebook (Fix advanced examples notebook #154) * Adds contributing.md (Add contributing.md #158) * Adds bioscrape simulation comparison (Benchmarking bioscrape performance #159) * Installation via python setup.py install replaced with pip install. * New contributor guidelines.
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Addresses #156
Adds a notebook that runs deterministic and stochastic simulations for a repressilator using bioscrape, libroadrunner, MATLAB, and COPASI. The MATLAB and COPASI code is included as .mlx and .cps files.