Update group publications display #322

osanstrong · 2024-07-12T15:55:14Z

Summary of changes

This PR updates the website's bibliography to include missing publications, and adds select PDFs of journal articles, refereed conference proceedings, and book chapters.

On creation (first two commits), this PR mimics the changes of #313 , in a new branch untainted with revised/removed pdf uploads.

Types of changes

Bug fix (non-breaking change which fixes an issue)
New feature (non-breaking change which adds functionality)
Breaking change (fix or feature that would cause existing functionality to change)
I have read the CONTRIBUTING document.
My code follows the code style of this project.
My change requires a change to the documentation.
I have updated the documentation accordingly.
I have added tests to cover my changes.
All new and existing tests passed.

Associated Issues and PRs

Issue: Add newer publications #279 Update group publication list #313

Associated Developers

Dev: @abachma2 @katyhuff

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…eed conference proceedings where available

abachma2

Thanks for fixing this up @osanstrong! I have a few comments. I think there are two main things to think about, and @katyhuff may have to help you answer them:

Are the things in the refrences.bib file relevant to the group? They definitely involve the group or members of the group in some way, but was the work done in the group?
Does Prof. Huff want items from her time at DOE on the website?

abachma2 · 2024-07-12T15:57:13Z

gidden_agent-based_2013.pdf

Did this file get moved up a directory for some reason?

abachma2 · 2024-07-12T15:57:44Z

papers/ashraf_preliminary_2021.pdf

Are we trying to add prelims to the website @katyhuff? I don't think those are typically public but it's your group.

Notably, the ashraf preliminary paper is not a prelim. It's a journal article whose first word is "Preliminary".

abachma2 · 2024-07-12T16:01:03Z

_bibliography/references.bib

-}
+
+@phdthesis{yardas_implementation_2023,
+	type = {Thesis},


Suggested change

type = {Thesis},

type = {Masters Thesis},

There is something like this (this may not be exactly it) you can add it to tell bibtex this is an MS thesis, or else it assumes a PhD thesis.

abachma2 · 2024-07-12T16:12:52Z

_bibliography/references.bib

+	journal = {Progress in Nuclear Energy},
+	author = {Bae, Jin Whan and Singer, Clifford E. and Huff, Kathryn D.},
+	month = jul,
+	y


The @ here is red in the GitHUb diff. Can you check the syntax to make sure that isn't an issue here?

That's odd; I'll see if I can figure out why the diff highlighter thinks it's an error, but I just checked and these entries are still processed and appear on the website.

I couldn't fully identify what it was about them, but a few entries had large abstracts which, with linebreaks in them, prevented github's syntax highlighting from recognizing the end of the field (Whatever it was didn't seem to affect the website or vim parsing it properly); removing the linebreaks from these specific entries seems to have mostly fixed the syntax highlighting in the diff.

abachma2 · 2024-07-12T16:13:52Z

_bibliography/references.bib

+	volume = {114},
+	issn = {0149-1970},
+	url = {http://www.sciencedirect.com/science/article/pii/S014919701930037X},
+	doi = {10.1016/j.pnucene.2019.02.001},
+	abstract = {The French 2012–2015 Commission Nationale d’Evaluation Reports emphasize preparation for a transition from Light Water Reactors (LWRs) to Sodium-Cooled Fast Reactors (SFRs). We used the Cyclus nuclear fuel cycle simulator to explore the feasibility of enabling a French transition to an SFR fleet by using Used Nuclear Fuel (UNF) from other European Union (EU) nations. A Cyclus simulation captured nuclear power deployment in the EU from 1970 to 2160. In this simulation, France begins its planned transition to SFRs as existing LWRs are decommissioned. These SFRs are fueled with UNF accumulated by other EU nations and reprocessed in France. The impact of reactor lifetime extensions and SFR breeding ratios on time-to-transition were investigated with additional simulations. These simulations demonstrate that France can avoid deployment of additional LWRs by accepting UNF from other EU nations, that lifetime extensions delay time-to-transition, and improved breeding ratios are not particularly impactful.},
+	urldate = {2019-04-15},
+	journal = {Progress in Nuclear Energy},
+	author = {Bae, Jin Whan and Singer, Clifford E. and Huff, Kathryn D.},
+	month = jul,
+	y


@katyhuff, do you want this one in here? This seems like an "official DOE" thing. There might be a couple more that fit under this catagory in here.

Sorry @abachma2 -- whichever thing you commented on is no longer where it was, so I don't know which paper you meant to reference with this comment (I believe this is because @osanstrong had to revert some commits).

Things did get moved around. The broad question here is if you want items from your time at DOE on this website, since you were on an official leave of absence from the university. I think 2 examples of this are lines 2960-3024.

abachma2 · 2024-07-12T16:15:53Z

_bibliography/references.bib

+	author = {Bae, Jin Whan and Singer, Clifford E. and Huff, Kathryn D.},
+	month = jul,
+	y


Is this an MS or PHD thesis

abachma2 · 2024-07-12T16:20:21Z

_bibliography/references.bib

+@article{bae_synergistic_2019,
+	title = {Synergistic spent nuclear fuel dynamics within the {European} {Union}},
+	volume = {114},
+	issn = {0149-1970},
+	url = {http://www.sciencedirect.com/science/article/pii/S014919701930037X},
+	doi = {10.1016/j.pnucene.2019.02.001},
+	abstract = {The French 2012–2015 Commission Nationale d’Evaluation Reports emphasize preparation for a transition from Light Water Reactors (LWRs) to Sodium-Cooled Fast Reactors (SFRs). We used the Cyclus nuclear fuel cycle simulator to explore the feasibility of enabling a French transition to an SFR fleet by using Used Nuclear Fuel (UNF) from other European Union (EU) nations. A Cyclus simulation captured nuclear power deployment in the EU from 1970 to 2160. In this simulation, France begins its planned transition to SFRs as existing LWRs are decommissioned. These SFRs are fueled with UNF accumulated by other EU nations and reprocessed in France. The impact of reactor lifetime extensions and SFR breeding ratios on time-to-transition were investigated with additional simulations. These simulations demonstrate that France can avoid deployment of additional LWRs by accepting UNF from other EU nations, that lifetime extensions delay time-to-transition, and improved breeding ratios are not particularly impactful.},
+	urldate = {2019-04-15},
+	journal = {Progress in Nuclear Energy},
+	author = {Bae, Jin Whan and Singer, Clifford E. and Huff, Kathryn D.},
+	month = jul,
+	y


Really not sure @katyhuff wants this one in the group publications 😆

Sorry @abachma2 -- whichever thing you commented on is no longer where it was, so I don't know which paper you meant to reference with this comment (I believe this is because @osanstrong had to revert some commits).

This comment was in reference to a news article about Dr. Huff being banned from entry into Russia because of her position in the US Executive Branch. The item is now at line 3820.

abachma2 · 2024-07-12T16:23:31Z

_bibliography/references.bib

+	month = jul,
+	y


This one was a seminar at UTK, which I think should be the address, and not UIUC.

abachma2 · 2024-07-12T16:24:01Z

_bibliography/references.bib

+	journal = {Progress in Nuclear Energy},
+	author = {Bae, Jin Whan and Singer, Clifford E. and Huff, Kathryn D.},
+	month = jul,
+	y


Another one with a red @

osanstrong · 2024-07-12T17:47:46Z

I will discuss publication relevancies again with Professor Huff; Correct, the latest list was publications which were by ARFC members (as members) or the group as a whole. This can definitely be revised, especially in regards to file uploads before merging anything.

As for the MS/PHD thesis differentiation, I'll go through the theses on Zotero and make sure that distinction is present.

…ection in abstract of ridley_preliminary_2017 which was confusing syntax highlighters

…interfered with github syntax highlighting

osanstrong · 2024-09-15T05:55:59Z

@katyhuff
I came back to review this again, and I wanted to check in on what files we wanted added to the website:

Conference Proceedings: After the last time we talked about this a while back, I was under the impression we don't want to add PDF copies of these. Am I remembering that correctly?
Journal Articles:
- Some listed articles were written by then-active ARFC members, but alongside some or even mostly non-ARFC authors. (E.g. the article about JOSS has 16 co-authors, though it already had a pdf uploaded anyways) Should new files only be added for articles written primarily by ARFC members, or are files still relevant so long as they're by an ARFC author and relevant to the group?
- Should these file uploads be minimized by any other criteria? (E.g., whether you in particular are one of the authors, for the sake of consent)
Other:
- Did we want files for books/book chapters on the publication list? I had been guessing not, at the very least because of the file size, let alone other considerations.

katyhuff · 2024-09-20T18:26:24Z

Thanks for the question @osanstrong .

Conference Proceedings: After the last time we talked about this a while back, I was under the impression we don't want to add PDF copies of these. Am I remembering that correctly?

I don't think these need to be a priority unless they are "referreed conference proceedings".

Journal Articles:
Some listed articles were written by then-active ARFC members, but alongside some or even mostly non-ARFC authors. (E.g. the article about JOSS has 16 co-authors, though it already had a pdf uploaded anyways) Should new files only be added for articles written primarily by ARFC members, or are files still relevant so long as they're by an ARFC author and relevant to the group?

It does not matter how many collaborators are on the paper. Articles on which an ARFC member was a co-author while they were in the group should be included.

Should these file uploads be minimized by any other criteria? (E.g., whether you in particular are one of the authors, for the sake of consent)

I'm not sure I understand this question.

Did we want files for books/book chapters on the publication list? I had been guessing not, at the very least because of the file size, let alone other considerations.

No

osanstrong added 2 commits July 11, 2024 19:11

Updated bibliography to add new publications

3f52ccc

Added missing PDFs for journal publications, book chapters, and refer…

3767288

…eed conference proceedings where available

osanstrong added Difficulty:1-Beginner Priority:2-Normal Type:Feature labels Jul 12, 2024

abachma2 reviewed Jul 12, 2024

View reviewed changes

osanstrong added 4 commits July 12, 2024 13:31

Moved incorrectly filed pdf to papers folder

76826ba

Modified bibliography to fix thesis categorization and a markdown inj…

2df336a

…ection in abstract of ridley_preliminary_2017 which was confusing syntax highlighters

Removed linebreaks from certain large entries' abstract fields which …

892ec6c

…interfered with github syntax highlighting

Fixed location given for bachmann_fuel_2023

a3814f3

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Update group publications display #322

Update group publications display #322

osanstrong commented Jul 12, 2024 •

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Update group publications display #322

Are you sure you want to change the base?

Update group publications display #322

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osanstrong commented Jul 12, 2024 • edited Loading

Summary of changes

Types of changes

Associated Issues and PRs

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osanstrong commented Jul 12, 2024

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