Gene prediction using empirically determined introns

This pipeline infers exon functional annotations using coordinates from a .gff file and derives corresponding intron coordinates along with relevant annotations. Users can optionally specify the length of intronic fragments to extract. The pipeline is suited for splicing code analyses.

Creating so called sequence logos for UTRs and introns of genes in the human genome

Working with genomic introns

A tool to determine locations of potential novel intronic splicing

A database of introns and alternative splicing events across human tissues

Scripts used to prepare the "Self-splicing introns in genes of Bastillevirinae bacteriophages" paper

Manuscript data and code repository