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Releases: wtsi-npg/npg_ml_warehouse

41.1

23 Jun 23:18
1165161
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  • add target autosome stats to autoqc loader
  • correct retrieval of split and non-split data for bam_flagstats autoqc results

release 39.11

14 Jan 11:49
ae8f402
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  • auto QC loader query costruction: do not use invalid option
  • wh loader: skip loading results for multi-component entities
  • to retrieve lane-level results for multi-component entities,
    ask for lanes and plexes separately
  • stop loading Illumina qc data that came from chached_query table
    of the npg_qc database (pf_cluster_count, raw_cluster_count, pf_bases)
  • load q30 and q40 yields from qX_yield autoqc check results
  • load bam_flagstats target metrics into iseq_product_metrics table
  • a script to launch warehouse loader script for certain runs

39.9

17 Apr 15:57
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  • multiple RNA-related metrics to be loaded into iseq_product_metrics
    when updating the data warehouse
  • added support for NPG SeQC metric tables that only have composition
    and not id_run, position and tag_index columns such as rna_seqc
  • added tag_hops_percent and tag_hops_power

39.5

20 Jun 14:16
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  • to enforce business logic consistency, common parts of lims drivers
    factored out; a driver parent object is created
  • early failure with a clear error message when essential parts of
    a flowcell database record are missing
  • correct computation of expected abs path in test

39.2

13 Dec 15:22
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  • code changes to eliminate warnings when running under Perl 5.22.2
  • PDL return value is now dealt with withing autoqc result objects,
    the warehouse loader can rely on them being either a number
    or undefined
  • Travis CI testing added