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README and archive generation minor updates #93

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merged 2 commits into from
Jul 29, 2024
Merged

README and archive generation minor updates #93

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00c365d
add publish/sync commands to README
tomkralidis Jul 29, 2024
6d6fbb1
calculate todays date on archive ingest init
tomkralidis Jul 29, 2024
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19 changes: 19 additions & 0 deletions README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -158,6 +158,17 @@ woudc-data-registry data verify foo.dat -l
woudc-data-registry data ingest /path/to/dir -l
```

#### Search Index Generation

```bash
# sync data registry to elasticsearch
# sync the data and metadata tables
woudc-data-registry admin search sync

# sync the data product tables
woudc-data-registry admin search product-sync
```

#### UV Index Generation

```bash
Expand Down Expand Up @@ -207,6 +218,14 @@ The operator report is a more in-depth error log in CSV format, with a filename
Operator reports contain one line per error or warning that happened during the processing run. The operator report
is meant to be a human-readable log which makes specific errors easy to find and diagnose.

#### Sending Emails to Contributors

To generate emails for contributors:

```bash
woudc-data-registry data generate-emails /path/to/dir
```

### Development

```bash
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83 changes: 43 additions & 40 deletions data-registry-ingest.sh
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@@ -1,58 +1,61 @@
#1/bin/bash

# The purpose of this script is to ingest all of the operational WOUDC Archive datasets and rename the generated ingest reports to avoid overwriting
# Inital setup and table initialization of WOUDC Data Registry is required to run this script
# Replace YYYY-MM-DD with today's date before proceeding

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/TotalOzone_1.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/TotalOzone_1.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/TotalOzone_1.0_1_run_report
TODAY=`date +"%Y-%m-%d"`

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/TotalOzone_1.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/TotalOzone_1.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/TotalOzone_1.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/TotalOzone_2.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/TotalOzone_2.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/TotalOzone_2.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/TotalOzone_2.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/TotalOzone_2.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/TotalOzone_2.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Broad-band_1.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/Broad-band_1.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/Broad-band_1.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Broad-band_1.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/Broad-band_1.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/Broad-band_1.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Broad-band_2.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/Broad-band_2.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/Broad-band_2.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Broad-band_2.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/Broad-band_2.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/Broad-band_2.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Lidar_1.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/Lidar_1.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/Lidar_1.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Lidar_1.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/Lidar_1.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/Lidar_1.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Multi-band_1.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/Multi-band_1.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/Multi-band_1.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Multi-band_1.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/Multi-band_1.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/Multi-band_1.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/RocketSonde_1.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/RocketSonde_1.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/RocketSonde_1.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/RocketSonde_1.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/RocketSonde_1.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/RocketSonde_1.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/OzoneSonde_1.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/OzoneSonde_1.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/OzoneSonde_1.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/OzoneSonde_1.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/OzoneSonde_1.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/OzoneSonde_1.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/TotalOzoneObs_1.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/TotalOzoneObs_1.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/TotalOzoneObs_1.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/TotalOzoneObs_1.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/TotalOzoneObs_1.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/TotalOzoneObs_1.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Spectral_1.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/Spectral_1.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/Spectral_1.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Spectral_1.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/Spectral_1.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/Spectral_1.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Spectral_2.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/Spectral_2.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/Spectral_2.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/Spectral_2.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/Spectral_2.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/Spectral_2.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/UmkehrN14_1.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/UmkehrN14_1.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/UmkehrN14_1.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/UmkehrN14_1.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/UmkehrN14_1.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/UmkehrN14_1.0_1_run_report

woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/UmkehrN14_2.0_1 -y -r /apps/data/wdr-ingest/YYYY-MM-DD
mv /apps/data/wdr-ingest/YYYY-MM-DD/operator-report.csv /apps/data/wdr-ingest/YYYY-MM-DD/UmkehrN14_2.0_1.csv
mv /apps/data/wdr-ingest/YYYY-MM-DD/run_report /apps/data/wdr-ingest/YYYY-MM-DD/UmkehrN14_2.0_1_run_report
woudc-data-registry data ingest /apps/data/web/woudc-archive/Archive-NewFormat/UmkehrN14_2.0_1 -y -r /apps/data/wdr-ingest/$TODAY
mv /apps/data/wdr-ingest/$TODAY/operator-report.csv /apps/data/wdr-ingest/$TODAY/UmkehrN14_2.0_1.csv
mv /apps/data/wdr-ingest/$TODAY/run_report /apps/data/wdr-ingest/$TODAY/UmkehrN14_2.0_1_run_report

## Table generation process into registry for totalozone, uv-index and ozonesonde
woudc-data-registry product totalozone generate -y /apps/data/web/woudc-archive/Archive-NewFormat/
Expand Down
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