This repository contains Dockerfiles and Apptainer definition files for containers deployed on Rivanna, the high-performance computing cluster at the University of Virginia.
. ├── app1 │ ├── version1 │ │ ├── Dockerfile │ │ └── README.md │ └── version2 │ ├── Dockerfile │ └── README.md └── app2 └── version1 ├── Dockerfile └── README.md
Each version should reside in its own directory with a README.md. Here is a suggested template:
<name of main app> <version> <any other important info>
<homepage of main app>
<any other apps/packages>
Usage on Rivanna:
```
module load apptainer
apptainer pull docker://uvarc/<app>:<tag>
./<app>_<tag>.sif
```
Individual README.md files are used as the Docker Hub repository overview.
To contribute, please visit the wiki for instructions and tips.
| image | description | pulls |
|---|---|---|
| alphafold | Multistage build to reduce image size |  |
| deeplabcut | DeepLabCut with Anipose |  |
| pytorch | PyTorch with popular packages for Rivanna users |  |
| qiime2 | QIIME2 with proper clean up |  |
| tensorflow | TensorFlow with popular packages for Rivanna users |  |
R. Sun and K. Siller, HPC Container Management at the University of Virginia, PEARC '24: Practice and Experience in Advanced Research Computing 2024: Human Powered Computing 73, 1 (2024). doi:10.1145/3626203.3670568