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Add link to pancreas dataset #750

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Oct 8, 2024
Merged

Add link to pancreas dataset #750

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995abd3
Add link to pancreas dataset
Oct 5, 2024
1a522e5
Added pancreas dataset to docs
Oct 7, 2024
21002c2
fixed citation + func ref
Oct 7, 2024
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1 change: 1 addition & 0 deletions docs/user.rst
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Expand Up @@ -53,6 +53,7 @@ Datasets
datasets.drosophila
datasets.hspc
datasets.mosta
datasets.pancreas_multiome
datasets.sciplex
datasets.sim_align
datasets.simulate_data
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6 changes: 3 additions & 3 deletions src/moscot/datasets.py
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Expand Up @@ -281,11 +281,11 @@ def pancreas_multiome(
force_download: bool = True,
**kwargs: Any,
) -> Union[mu.MuData, ad.AnnData]: # pragma: no cover
"""Pancreatic endocrinogenesis dataset published with the moscot manuscript :cite:`Klein:23`.
"""Pancreatic endocrinogenesis dataset published with the moscot manuscript :cite:`klein:23`.

The dataset contains paired scRNA-seq and scATAC-seq data of pancreatic cells at embryonic days 14.5, 15.5, and
16.5. The data was preprocessed and filtered as described in the manuscript, the raw data and the full processed
data are available via GEO accession code GSE275562.
data are available via `GEO <https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi>`_ accession code GSE275562.

Parameters
----------
Expand All @@ -296,7 +296,7 @@ def pancreas_multiome(
force_download
Whether to force-download the data.
kwargs
Keyword arguments for :func:`anndata.read_h5ad` if `rna_only`, else for :func:`mudata.read`.
Keyword arguments for :func:`anndata.io.read_h5ad` if `rna_only`, else for :func:`mudata.read`.

Returns
-------
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