Correct call as get_sequences_info not yet moved to base class.

statgen · Oct 10, 2023 · 6f49dd9 · 6f49dd9
1 parent 99910af
commit 6f49dd9
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/bravo_api/VERSION b/bravo_api/VERSION
@@ -1 +1 @@
-2.13.1
+2.13.2
diff --git a/bravo_api/core/s3_cram_source.py b/bravo_api/core/s3_cram_source.py
@@ -60,7 +60,7 @@ def get_info(self, variant_id):
         if chrom not in self.contigs:
             return []
         else:
-            return CramSource.get_sequences_info(self.variant_map, chrom, int(pos), ref, alt)
+            return S3CramSource.get_sequences_info(self.variant_map, chrom, int(pos), ref, alt)
 
     def get_crai(self, variant_id, sample_no: int, sample_het: bool) -> io.BytesIO:
         """ Crai for data of individual sample that is representative of given variant
@@ -75,7 +75,7 @@ def get_crai(self, variant_id, sample_no: int, sample_het: bool) -> io.BytesIO:
         chrom = CramSource.normalize_contig_prefix(chrom, self.contigs_chr_prefixed)
 
         sample_id = CramSource.lookup_sample_id(self.variant_map, chrom, pos, ref, alt,
-                                                  sample_het, sample_no)
+                                                sample_het, sample_no)
         logger.debug('sample_id: %s', sample_id)
         cram_url = self.calc_cram_url(sample_id)
 
@@ -100,7 +100,7 @@ def get_cram(self, variant_id: str, sample_no: int, sample_het: bool,
 
         # Lookup sample_id
         sample_id = CramSource.lookup_sample_id(self.variant_map, chrom, pos, ref, alt,
-                                                  sample_het, sample_no)
+                                                sample_het, sample_no)
 
         # Lookup cram_path
         cram_url = self.calc_cram_url(sample_id)