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Set 1.5.3 link to latest working notebook
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milot-mirdita committed Dec 29, 2023
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2 changes: 1 addition & 1 deletion AlphaFold2.ipynb
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"##ColabFold v1.5.4: AlphaFold2 using MMseqs2\n",
"\n",
"Easy to use protein structure and complex prediction using [AlphaFold2](https://www.nature.com/articles/s41586-021-03819-2) and [Alphafold2-multimer](https://www.biorxiv.org/content/10.1101/2021.10.04.463034v1). Sequence alignments/templates are generated through [MMseqs2](mmseqs.com) and [HHsearch](https://github.com/soedinglab/hh-suite). For more details, see <a href=\"#Instructions\">bottom</a> of the notebook, checkout the [ColabFold GitHub](https://github.com/sokrypton/ColabFold) and read our manuscript.\n",
"Old versions: [v1.4](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.4.0/AlphaFold2.ipynb), [v1.5.1](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.1/AlphaFold2.ipynb), [v1.5.2](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.2/AlphaFold2.ipynb), [v1.5.3](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.3/AlphaFold2.ipynb)\n",
"Old versions: [v1.4](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.4.0/AlphaFold2.ipynb), [v1.5.1](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.1/AlphaFold2.ipynb), [v1.5.2](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.2/AlphaFold2.ipynb), [v1.5.3-patch](https://colab.research.google.com/github/sokrypton/ColabFold/blob/56c72044c7d51a311ca99b953a71e552fdc042e1/AlphaFold2.ipynb)\n",
"\n",
"[Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.\n",
"*Nature Methods*, 2022](https://www.nature.com/articles/s41592-022-01488-1)"
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2 changes: 1 addition & 1 deletion batch/AlphaFold2_batch.ipynb
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"\n",
"`result_dir` results will be written to the result directory in Google Drive\n",
"\n",
"Old versions: [v1.4](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.4.0/batch/AlphaFold2_batch.ipynb), [v1.5.1](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.1//batch/AlphaFold2_batch.ipynb), [v1.5.2](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.2//batch/AlphaFold2_batch.ipynb), [v1.5.3](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.3//batch/AlphaFold2_batch.ipynb)\n",
"Old versions: [v1.4](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.4.0/batch/AlphaFold2_batch.ipynb), [v1.5.1](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.1/batch/AlphaFold2_batch.ipynb), [v1.5.2](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.2/batch/AlphaFold2_batch.ipynb), [v1.5.3-patch](https://colab.research.google.com/github/sokrypton/ColabFold/blob/56c72044c7d51a311ca99b953a71e552fdc042e1/batch/AlphaFold2_batch.ipynb)\n",
"\n",
"<strong>For more details, see <a href=\"#Instructions\">bottom</a> of the notebook and checkout the [ColabFold GitHub](https://github.com/sokrypton/ColabFold). </strong>\n",
"\n",
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