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Update docker install instruction to GHCR
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milot-mirdita committed Oct 13, 2022
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Expand Up @@ -11,7 +11,7 @@ MMseqs2 (Many-against-Many sequence searching) is a software suite to search and

[Mirdita M, Steinegger M, Breitwieser F, Soding J, Levy Karin E: Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics, doi: 10.1093/bioinformatics/btab184 (2021)](https://doi.org/10.1093/bioinformatics/btab184).

[![BioConda Install](https://img.shields.io/conda/dn/bioconda/mmseqs2.svg?style=flag&label=BioConda%20install)](https://anaconda.org/bioconda/mmseqs2) [![Github All Releases](https://img.shields.io/github/downloads/soedinglab/mmseqs2/total.svg)](https://github.com/soedinglab/mmseqs2/releases/latest) [![Biocontainer Pulls](https://img.shields.io/endpoint?url=https%3A%2F%2Fmmseqs.com%2Fbiocontainer.php%3Fcontainer%3Dmmseqs2)](https://biocontainers.pro/#/tools/mmseqs2) [![Docker Pulls](https://img.shields.io/docker/pulls/soedinglab/mmseqs2.svg)](https://hub.docker.com/r/soedinglab/mmseqs2) [![Build Status](https://dev.azure.com/themartinsteinegger/mmseqs2/_apis/build/status/soedinglab.MMseqs2?branchName=master)](https://dev.azure.com/themartinsteinegger/mmseqs2/_build/latest?definitionId=2&branchName=master) <a href="https://chat.mmseqs.com/"><img src="https://chat.mmseqs.com/api/v1/shield.svg?type=online&name=chat&icon=false" /></a>
[![BioConda Install](https://img.shields.io/conda/dn/bioconda/mmseqs2.svg?style=flag&label=BioConda%20install)](https://anaconda.org/bioconda/mmseqs2) [![Github All Releases](https://img.shields.io/github/downloads/soedinglab/mmseqs2/total.svg)](https://github.com/soedinglab/mmseqs2/releases/latest) [![Biocontainer Pulls](https://img.shields.io/endpoint?url=https%3A%2F%2Fmmseqs.com%2Fbiocontainer.php%3Fcontainer%3Dmmseqs2)](https://biocontainers.pro/#/tools/mmseqs2) [![Build Status](https://dev.azure.com/themartinsteinegger/mmseqs2/_apis/build/status/soedinglab.MMseqs2?branchName=master)](https://dev.azure.com/themartinsteinegger/mmseqs2/_build/latest?definitionId=2&branchName=master) <a href="https://chat.mmseqs.com/"><img src="https://chat.mmseqs.com/api/v1/shield.svg?type=online&name=chat&icon=false" /></a>

<p align="center"><img src="https://github.com/soedinglab/mmseqs2/master/.github/mmseqs2_logo.png" height="256" /></p>

Expand All @@ -28,7 +28,7 @@ MMseqs2 can be used by [compiling from source](https://github.com/soedinglab/MMs
# install via conda
conda install -c conda-forge -c bioconda mmseqs2
# install docker
docker pull soedinglab/mmseqs2
docker pull ghcr.io/soedinglab/mmseqs2
# static build with AVX2 (fastest)
wget https://mmseqs.com/latest/mmseqs-linux-avx2.tar.gz; tar xvfz mmseqs-linux-avx2.tar.gz; export PATH=$(pwd)/mmseqs/bin/:$PATH
# static build with SSE4.1
Expand All @@ -40,7 +40,7 @@ MMseqs2 requires an AMD or Intel 64-bit system (check with `uname -a | grep x86_

MMseqs2 also works on ARM64 systems and on PPC64LE systems with POWER8 ISA or newer.

We also provide static binaries for all supported platforms at [mmseqs.com/latest](https://mmseqs.com/latest).
We provide static binaries for all supported platforms at [mmseqs.com/latest](https://mmseqs.com/latest).

MMseqs2 comes with a bash command and parameter auto completion, which can be activated by adding the following lines to your $HOME/.bash_profile:

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