add wildcard_constraints to prevent breaking on complex fastq names

snakemake-workflows · Sep 6, 2021 · 5431e08 · 5431e08
1 parent dfd0b9c
commit 5431e08
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -14,6 +14,9 @@ samples = (
     .sort_index()
 )
 
+wildcard_constraints:
+    sample="|".join(samples["sample_name"]),
+
 
 def get_final_output():
     final_output = expand(