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feat: add maftools output #297
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keep it set to false, so users have to actively turn it on
…vate in config-simple
johanneskoester
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Jun 13, 2024
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Just one thing
…d INFO (and ANN) field names for vcf2maf conversion
Co-authored-by: Johannes Köster <johannes.koester@tu-dortmund.de>
…nt users to see and fix this
…ing lookup functions with defaults for all the fields
…in `config.yaml`
…it is `activate: false`, except for one case (to test that syntax, as well)
dlaehnemann
commented
Aug 23, 2024
dlaehnemann
commented
Aug 23, 2024
dlaehnemann
commented
Aug 23, 2024
dlaehnemann
commented
Aug 23, 2024
dlaehnemann
commented
Aug 23, 2024
…the default expected `--vcf-normal-id` that is checked for, even if the optional `--normal-id` is not specified
johanneskoester
requested changes
Aug 26, 2024
… we need this Co-authored-by: Johannes Köster <johannes.koester@tu-dortmund.de>
…al_alias to control_alias, to make it clear that maf format and plotting can be used more generally
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