Spectral Library from Command Line #2386
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Alexander-Sol
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Jul 19, 2024
elaboy
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Jul 23, 2024
YulingDai
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Jul 23, 2024
nbollis
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Jul 24, 2024
* Updated to MzLib 1.0.548 and fixed custom ions in search tasks * reverted calibration task change * merged in master bbbyy * Enabled Library Loading from command line
nbollis
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Aug 16, 2024
* Updated to MzLib 1.0.548 and fixed custom ions in search tasks * reverted calibration task change * merged in master bbbyy * Spectral Library from Command Line (#2386) * Updated to MzLib 1.0.548 and fixed custom ions in search tasks * reverted calibration task change * merged in master bbbyy * Enabled Library Loading from command line * replaced "Peptides" with GlobalVariables.AnalyteType * built lazy loading search result structure for post search analysis task * Finsihed test case strucutre, added test for result files. Added top-down test case * changed access modifier * Refactored test case setup * Added more test cases to hopefully up coverage
trishorts
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Sep 24, 2024
* Updated to MzLib 1.0.548 and fixed custom ions in search tasks * reverted calibration task change * merged in master bbbyy * Spectral Library from Command Line (#2386) * Updated to MzLib 1.0.548 and fixed custom ions in search tasks * reverted calibration task change * merged in master bbbyy * Enabled Library Loading from command line * Changed Custom XLer to use doubles in text boxes instead of integers --------- Co-authored-by: trishorts <mshort@chem.wisc.edu>
nbollis
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Sep 25, 2024
* Updated to MzLib 1.0.548 and fixed custom ions in search tasks * reverted calibration task change * merged in master bbbyy * Spectral Library from Command Line (#2386) * Updated to MzLib 1.0.548 and fixed custom ions in search tasks * reverted calibration task change * merged in master bbbyy * Enabled Library Loading from command line * Adjusted MetaDrawSettings IO to default to default values instead of a uniform default * Tested MetaDraw Settings loading under numerous conditions * Fixed crash on MetaDraw tab switch while selecting ambiguous result * fixed crash on ambiguous selected on chimera tab to child scan * general cleanup * Adjusted test data to expand code coverage * Added ability to select your own tolerance for MetaDraw fragmentation reanalysis --------- Co-authored-by: trishorts <mshort@chem.wisc.edu>
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Command line previously assumed that all non-fasta database files were xml files, causing a crash when loading in a spectral library.