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  1. gb2fasta gb2fasta Public

    Perl script to convert GenBank records to FASTA format

    Perl 4

  2. mask_fastq mask_fastq Public

    Perl/Python scripts that masks bases as "N"s given a PHRED quality score threshold

    Perl

  3. rBt rBt Public

    Handy functions for dealing with BEAST trees in R

    R 4 3

  4. vcf2fasta vcf2fasta Public

    Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file

    Python 46 7

  5. ConcatFasta ConcatFasta Public

    Concatenates FASTA files, imputes dummy sequences, and prints a partition table

    Python 4 1

  6. PolyFastA PolyFastA Public

    Fast diversity estimator for FASTA sequences in Python

    Python 3