Skip to content
This repository has been archived by the owner on Nov 7, 2021. It is now read-only.

always truncate inputs before sanitizing #58

Merged
merged 1 commit into from
May 3, 2016

Conversation

satta
Copy link
Collaborator

@satta satta commented May 3, 2016

This PR switches the order of input preparation steps: now input sequence headers are truncated at the first whitespace character (if requested) before replacing special characters with underscores. This is more likely the intended effect of this option when given by a user, and it makes sure that the replacement of special characters is a means of last resort if &,= etc. remain in the sequence headers.

@satta satta merged commit da0f7ac into sanger-pathogens:master May 3, 2016
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant