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Make sure Docker Hub builds working images #41

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merged 2 commits into from
Jan 11, 2016

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@satta satta commented Jan 7, 2016

Fixes and optimizations for the images. See commit msgs for details.

this fixes the dreaded:
Can't use 'defined(@array)' (Maybe you should just omit the defined()?)
libcolamd-2.8.0 went away, needed by the augustus 3.2 binary.
We now build our own AUGUSTUS to avoid this outdated dependency.
On a positive note, we don't need to build tantan and aragorn
anymore, working versions are in testing now.
Also installing Perl stuff from the archive now instead of via
CPAN for consistency.
aslett1 added a commit that referenced this pull request Jan 11, 2016
Make sure Docker Hub builds working images
@aslett1 aslett1 merged commit e6e6512 into sanger-pathogens:master Jan 11, 2016
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satta commented Jan 11, 2016

Excellent, thanks!

The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.

@satta satta deleted the dockerfix branch January 11, 2016 14:23
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