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Various improvements #34

Merged
merged 7 commits into from
Sep 10, 2015
Merged

Various improvements #34

merged 7 commits into from
Sep 10, 2015

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martinghunt
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  1. Handle the case when no reads map to any of the reference genes
  2. Make nicely formatted fasta file of reference genes to stop tools dying
  3. Write fasta files of assembled gene sequences for each cluster
  4. bug fix: refcheck dies if there are spaces in any sequence name

@jgtate jgtate self-assigned this Sep 10, 2015
jgtate pushed a commit that referenced this pull request Sep 10, 2015
@jgtate jgtate merged commit d76cb3a into sanger-pathogens:master Sep 10, 2015
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2 participants