Add an MN:i tag (number of SEQ bases at time of modification tag update). #714
Conversation
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What does the Z stand for? In #646 (comment), the MZ tag name was just a placeholder: “Add a new tag e.g. |
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Agreed, it's still obviously up for anyone to propose something better. Starting with M is reasonable as it's then with the others. MN may be better as it's then ML, MM, MN in a clump together for the sorted list of tags? N for Number of bases? Z was tentatively just siZe in my head I guess. |
jkbonfield
changed the title
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As agreed during the last conference call, I renamed MZ to MN. (Mnenomic could be Modification Number of bases?) |
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I've pushed my rearrangement of the text (to put the description of MN before the motivation of what it's good for) that I did after the discussion in the last meeting. Back to you @jkbonfield — If you're happy with this text, I'm happy for the PR to be squashed 'n' merged. |
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Thanks John. Will squash and merge. |
This is used as a sanity check on the validity of the MM and ML tags. It holds the length of SEQ at the time MM and ML were produced and/or updated. The intention is to provide a mechanism to detect hard-clipping has been performed with a tool that is not MM/ML aware. Fixes samtools#646
jkbonfield
temporarily deployed
to
github-pages
This is used as a sanity check on the validity of the MM and ML tags. It holds the length of SEQ at the time MM and ML were produced and/or updated. The intention is to provide a mechanism to detect hard-clipping has been performed with a tool that is not MM/ML aware.
Fixes #646