Finalised VCFv4.5 specifications

Makefile

@@ -15,7 +15,7 @@ PDFS =	BCFv1_qref.pdf \
 	VCFv4.2.pdf \
 	VCFv4.3.pdf \
 	VCFv4.4.pdf \
-	VCFv4.5.draft.pdf
+	VCFv4.5.pdf
 
 pdf: $(PDFS:%=new/%)
 
@@ -32,7 +32,7 @@ new/VCFv4.1.pdf    diff/VCFv4.1.pdf:    VCFv4.1.tex    new/VCFv4.1.ver
 new/VCFv4.2.pdf    diff/VCFv4.2.pdf:    VCFv4.2.tex    new/VCFv4.2.ver
 new/VCFv4.3.pdf    diff/VCFv4.3.pdf:    VCFv4.3.tex    new/VCFv4.3.ver
 new/VCFv4.4.pdf    diff/VCFv4.4.pdf:    VCFv4.4.tex    new/VCFv4.4.ver
-new/VCFv4.5.draft.pdf  diff/VCFv4.5.draft.pdf:  VCFv4.5.draft.tex  new/VCFv4.5.draft.ver
+new/VCFv4.5.pdf    diff/VCFv4.5.pdf:    VCFv4.5.tex    new/VCFv4.5.ver
 new/CRAMcodecs.pdf diff/CRAMcodecs.pdf: CRAMcodecs.tex new/CRAMcodecs.ver
 
 # Set LATEXMK to "scripts/rerun.sh new/$* $(PDFLATEX)" to use the previous

README.md

@@ -38,8 +38,7 @@ It has no formal definition and several incompatible variants, but is described
 Variant calling data files
 --------------------------
 
-**[VCFv4.4.tex]** is the canonical specification for the Variant Call Format and its textual (VCF) and binary (BCF) encodings, while **[VCFv4.1.tex]**, **[VCFv4.2.tex]** and **[VCFv4.3.tex]** describe their predecessors.
-**[VCFv4.5.draft.tex]** is a working draft of the upcoming version of VCF format and is under active revision.
+**[VCFv4.5.tex]** is the canonical specification for the Variant Call Format and its textual (VCF) and binary (BCF) encodings, while **[VCFv4.1.tex]**, **[VCFv4.2.tex]**, **[VCFv4.3.tex]** and **[VCFv4.4.tex]** describe their predecessors.
 These formats are discussed on the [vcftools-spec mailing list][vcfspec-ml].
 
 **[BCFv1_qref.tex]** summarizes the obsolete BCF1 format historically produced by [samtools].  This format is no longer recommended for use, as it has been superseded by the more widely-implemented BCF2.
@@ -77,7 +76,7 @@ Transfer protocols
 [VCFv4.2.tex]:  http://samtools.github.io/hts-specs/VCFv4.2.pdf
 [VCFv4.3.tex]:  http://samtools.github.io/hts-specs/VCFv4.3.pdf
 [VCFv4.4.tex]:  http://samtools.github.io/hts-specs/VCFv4.4.pdf
-[VCFv4.5.draft.tex]: https://samtools.github.io/hts-specs/VCFv4.5.draft.pdf
+[VCFv4.5.tex]: https://samtools.github.io/hts-specs/VCFv4.5.pdf
 [BCFv1_qref.tex]: http://samtools.github.io/hts-specs/BCFv1_qref.pdf
 [BCFv2_qref.tex]: http://samtools.github.io/hts-specs/BCFv2_qref.pdf
 [BEDv1.tex]:    https://samtools.github.io/hts-specs/BEDv1.pdf

VCFv4.5.draft.tex → VCFv4.5.tex

@@ -17,8 +17,8 @@
 \renewcommand{\thefootnote}{\fnsymbol{footnote}}
 
 \begin{document}
-\input{VCFv4.5.draft.ver}
-\title{\huge \color{red} DRAFT SPEC SUBJECT TO CHANGE \\ The Variant Call Format Specification \\ \vspace{0.5em} \large VCFv4.5 and BCFv2.2}
+\input{VCFv4.5.ver}
+\title{The Variant Call Format Specification \\ \vspace{0.5em} \large VCFv4.5 and BCFv2.2}
 \date{\headdate}
 \maketitle
 \begin{quote}\small

index.md

@@ -26,7 +26,7 @@ Specifications:
 - [VCF v4.2](VCFv4.2.pdf)
 - [VCF v4.3](VCFv4.3.pdf)
 - [VCF v4.4](VCFv4.4.pdf)
-- [VCF v4.5 draft](VCFv4.5.draft.pdf)
+- [VCF v4.5](VCFv4.5.pdf)
 - [BED v1](BEDv1.pdf)
 - [crypt4gh](crypt4gh.pdf)
 - [Htsget](htsget.html)