build/pkgs/{python3,setuptools}: Update fedora distro info
#37833
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Documentation preview for this PR (built with commit b1b2fcd; changes) is ready! 🎉 |
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It seems to be OK but I have a small issue. In Fedora 39 I cannot actually test the changes since the required version for setuptools is bigger than the system version. I have a virtual machine with Fedora 40, where this could be applied but sagelib does not build, I guess there will be no problem anyway. |
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Yes, preparing a PR with such updates would be valuable! |
enriqueartal
approved these changes
Apr 21, 2024
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LGTM, I will prepare a PR for more updates. Do you know if it will be possible to deal with the problems with |
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Thanks! |
I'll take a look at this in the coming week |
vbraun
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Apr 28, 2024
…stro info
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### ⌛ Dependencies
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URL: sagemath#37833
Reported by: Matthias Köppe
Reviewer(s): Enrique Manuel Artal Bartolo
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<!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> This PR aims to be a continuation of sagemath#37833 in order to add more possible system packages and correct some other ones in `build/pkgs/*/distros/fedora.txt`. After a fresh installation I got some errors: - `src/sage/rings/lazy_series_ring.py`. The test passess without the PR. I am not sure which package is the cause. ``` File "src/sage/rings/lazy_series_ring.py", line 2008, in sage.rings.lazy_series_ring.LazyPowerSeriesRing.__init__ Failed example: TestSuite(L).run(skip=['_test_revert']) Expected nothing Got: Failure in _test_associativity: Traceback (most recent call last): File "/home/artal/sage/src/sage/misc/sage_unittest.py", line 298, in run test_method(tester=tester) File "/home/artal/sage/src/sage/categories/semigroups.py", line 123, in _test_associativity tester.assertEqual((x * y) * z, x * (y * z)) File "/usr/lib64/python3.12/unittest/case.py", line 885, in assertEqual assertion_func(first, second, msg=msg) File "/usr/lib64/python3.12/unittest/case.py", line 878, in _baseAssertEqual raise self.failureException(msg) AssertionError: s + ([61 chars]^4*t+2*s^2*t^3+5*s*t^4) + (s^7+3*s^5*t^2+2*s^4[27 chars],t)^8 != s + ([61 chars]^4*t+4*s^3*t^2+2*s^2*t^3+5*s*t^4) + (s^7+3*s^5[37 chars],t)^8 ------------------------------------------------------------ Failure in _test_distributivity: Traceback (most recent call last): File "/home/artal/sage/src/sage/misc/sage_unittest.py", line 298, in run test_method(tester=tester) File "/home/artal/sage/src/sage/categories/distributive_magmas_and _additive_magmas.py", line 83, in _test_distributivity tester.assertEqual((x + y) * z, (x * z) + (y * z)) File "/usr/lib64/python3.12/unittest/case.py", line 885, in assertEqual assertion_func(first, second, msg=msg) File "/usr/lib64/python3.12/unittest/case.py", line 878, in _baseAssertEqual raise self.failureException(msg) AssertionError: 2 + ([60 chars]3) + (s^5+5*s^4*t+4*s^3*t^2+4*s^2*t^3+5*s*t^4+[36 chars],t)^7 != 2 + ([60 chars]3) + 4*s^2*t^2 + (s^5+5*s^4*t+4*s^3*t^2+4*s^2*[48 chars],t)^7 ------------------------------------------------------------ The following tests failed: _test_associativity, _test_distributivity ********************************************************************** 1 item had failures: 1 of 33 in sage.rings.lazy_series_ring.LazyPowerSeriesRing.__init__ [685 tests, 1 failure, 15.80 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=128527404001182411276111307855871193848 src/sage/rings/lazy_series_ring.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 16.6 seconds cpu time: 15.8 seconds cumulative wall time: 15.8 seconds Features detected for doctesting: lrcalc_python,sage.libs.flint,sage.lib s.pari,sage.libs.singular,sage.modules,sage.rings.finite_rings,sage.ring s.number_field,sage.symbolic ``` - `src/sage/rings/polynomial/multi_polynomial_ideal.py`. Apparently `cddlib` is causing it. ``` File "src/sage/rings/polynomial/multi_polynomial_ideal.py", line 4192, in sage.rings.polynomial.multi_polynomial_ideal.NCPolynomialIdeal.groebn er_fan Failed example: g.reduced_groebner_bases() Exception raised: Traceback (most recent call last): File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1064, in reduced_groebner_bases return self.__reduced_groebner_bases ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'GroebnerFan' object has no attribute '_GroebnerFan__reduced_groebner_bases'. Did you mean: '_GroebnerFan__is_groebner_basis'? During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1015, in _gfan_reduced_groebner_bases return self.__gfan_reduced_groebner_bases ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'GroebnerFan' object has no attribute '_GroebnerFan__gfan_reduced_groebner_bases' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/artal/sage/src/sage/doctest/forker.py", line 715, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/artal/sage/src/sage/doctest/forker.py", line 1147, in compile_and_execute exec(compiled, globs) File "<doctest sage.rings.polynomial.multi_polynomial_ideal.NCPoly nomialIdeal.groebner_fan[3]>", line 1, in <module> g.reduced_groebner_bases() File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1066, in reduced_groebner_bases G = self._gfan_reduced_groebner_bases() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1017, in _gfan_reduced_groebner_bases B = self.gfan(cmd='bases') ^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1139, in gfan s = gfan(I, cmd, verbose=self.__verbose) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/misc/decorators.py", line 658, in wrapper return func(*args, **kwds) ^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/gfan.py", line 119, in __call__ raise RuntimeError(err) RuntimeError: Falling back on CddLib Falling back on CddLib ********************************************************************** 1 item had failures: 1 of 5 in sage.rings.polynomial.multi_polynomial_ideal.NCPolynomial Ideal.groebner_fan [984 tests, 1 failure, 5.50 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=196383766288019021986381945645510832135 src/sage/rings/polynomial/multi_polynomial_ideal.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 11.3 seconds cpu time: 5.3 seconds cumulative wall time: 5.5 seconds Features detected for doctesting: sage.combinat,sage.libs.flint,sage.lib s.singular,sage.modules,sage.plot,sage.rings.finite_rings,sage.rings.num ber_field,sage.symbolic ``` - `src/sage/interfaces/maxima_abstract.py`. The problem seems to be `maxima`. ``` File "src/sage/interfaces/maxima_abstract.py", line 161, in sage.interfaces.maxima_abstract.MaximaAbstract._command_runner Failed example: maxima._command_runner('describe', 'gcd') Expected: -- Function: gcd (<p_1>, <p_2>, <x_1>, ...) ... Got: <BLANKLINE> <BLANKLINE> -- Función: gcd (<p_1>, <p_2>, <x_1>, ...) Devuelve el máximo común divisor de <p_1> y <p_2>. La variable ‘gcd’ determiona qué algoritmo se va a utilizar. Asignándole a ‘gcd’ los valores ‘ez’, ‘subres’, ‘red’ o ‘spmod’, se seleccionan los algoritmos ‘ezgcd’, subresultante ‘prs’, reducido o modular, respectivamente. Si ‘gcd’ vale ‘false’ entonces ‘gcd(<p_1>, <p_2>, <x>)’ devolverá siempre 1 para cualquier <x>. Muchas funciones (por ejemplo, ‘ratsimp’, ‘factor’, etc.) hacen uso de ‘gcd’ implícitamente. En caso de polinomios homogéneos se recomienda darle a ‘gcd’ el valor ‘subres’. Para calcular un máximo común divisor en presencia de raíces, como en ‘gcd (<x>^2 - 2*sqrt(2)*<x> + 2, <x> - sqrt(2))’, la variable ‘algebraic’ debe igualarse a ‘true’ y ‘gcd’ no puede ser ‘ez’. <BLANKLINE> Se recomienda utilizar el algoritmo ‘subres’ en lugar de ‘red’, por ser aquél más moderno. <BLANKLINE> Si la variable ‘gcd’, cuyo valor por defecto es ‘spmod’, vale ‘false’, no se calculará el máximo común divisor cuando las expresiones se conviertan a su forma canónica (CRE), lo que redundará en ocasiones en mayor rapidez de cálculo. <BLANKLINE> There are also some inexact matches for `gcd'. Try `?? gcd' to see them. <BLANKLINE> true <BLANKLINE> ********************************************************************** File "src/sage/interfaces/maxima_abstract.py", line 198, in sage.interfaces.maxima_abstract.MaximaAbstract.help Failed example: maxima.help('gcd') Expected: -- Function: gcd (<p_1>, <p_2>, <x_1>, ...) ... Got: <BLANKLINE> <BLANKLINE> -- Función: gcd (<p_1>, <p_2>, <x_1>, ...) Devuelve el máximo común divisor de <p_1> y <p_2>. La variable ‘gcd’ determiona qué algoritmo se va a utilizar. Asignándole a ‘gcd’ los valores ‘ez’, ‘subres’, ‘red’ o ‘spmod’, se seleccionan los algoritmos ‘ezgcd’, subresultante ‘prs’, reducido o modular, respectivamente. Si ‘gcd’ vale ‘false’ entonces ‘gcd(<p_1>, <p_2>, <x>)’ devolverá siempre 1 para cualquier <x>. Muchas funciones (por ejemplo, ‘ratsimp’, ‘factor’, etc.) hacen uso de ‘gcd’ implícitamente. En caso de polinomios homogéneos se recomienda darle a ‘gcd’ el valor ‘subres’. Para calcular un máximo común divisor en presencia de raíces, como en ‘gcd (<x>^2 - 2*sqrt(2)*<x> + 2, <x> - sqrt(2))’, la variable ‘algebraic’ debe igualarse a ‘true’ y ‘gcd’ no puede ser ‘ez’. <BLANKLINE> Se recomienda utilizar el algoritmo ‘subres’ en lugar de ‘red’, por ser aquél más moderno. <BLANKLINE> Si la variable ‘gcd’, cuyo valor por defecto es ‘spmod’, vale ‘false’, no se calculará el máximo común divisor cuando las expresiones se conviertan a su forma canónica (CRE), lo que redundará en ocasiones en mayor rapidez de cálculo. <BLANKLINE> There are also some inexact matches for `gcd'. Try `?? gcd' to see them. <BLANKLINE> true <BLANKLINE> ********************************************************************** 2 items had failures: 1 of 2 in sage.interfaces.maxima_abstract.MaximaAbstract._command_runner 1 of 2 in sage.interfaces.maxima_abstract.MaximaAbstract.help [237 tests, 2 failures, 2.61 s] ---------------------------------------------------------------------- sage -t --random-seed=222682497766095343035925295278558065112 src/sage/interfaces/maxima_abstract.py # 2 doctests failed ---------------------------------------------------------------------- Total time for all tests: 7.7 seconds cpu time: 1.8 seconds cumulative wall time: 2.6 seconds Features detected for doctesting: sage.libs.pari ``` - `src/sage/interfaces/singular.py`. The problem is probably caused by `singular`: ``` File "src/sage/interfaces/singular.py", line 2326, in sage.interfaces.singular.SingularFunctionElement._instancedoc_ Failed example: 'matrix_expression' in A.nrows.__doc__ Expected: True Got: False ********************************************************************** File "src/sage/interfaces/singular.py", line 2425, in sage.interfaces.singular.get_docstring Failed example: 'groebner' in get_docstring('groebner') Expected: True Got: False ********************************************************************** File "src/sage/interfaces/singular.py", line 2427, in sage.interfaces.singular.get_docstring Failed example: 'standard.lib' in get_docstring('groebner') Expected: True Got: False ********************************************************************** 2 items had failures: 1 of 4 in sage.interfaces.singular.SingularFunctionElement._instancedoc_ 2 of 4 in sage.interfaces.singular.get_docstring [412 tests, 3 failures, 1.78 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=305672045870174292260177177950580332722 src/sage/interfaces/singular.py # 3 doctests failed ---------------------------------------------------------------------- Total time for all tests: 12.0 seconds cpu time: 0.6 seconds cumulative wall time: 1.8 seconds Features detected for doctesting: ``` - `src/sage/interfaces/giac.py`. The problem is caused by `giac`. ``` ile "src/sage/interfaces/giac.py", line 295, in sage.interfaces.giac.Giac Failed example: I1=(1/(cos(2*y)+cos(y))).integral(y,0,pi/4).simplify() Expected nothing Got: Giac crashed -- automatically restarting. ********************************************************************** File "src/sage/interfaces/giac.py", line 296, in sage.interfaces.giac.Giac Failed example: (I1-((-2*ln((sqrt(3)- 3*tan(1/8*pi))/(sqrt(3)+3*tan(1/8*pi)))*sqrt(3)- 3*tan(1/8*pi))/9)).normal() Expected: 0 Got: Giac crashed -- automatically restarting. sage96 ********************************************************************** File "src/sage/interfaces/giac.py", line 298, in sage.interfaces.giac.Giac Failed example: ((y+z*sqrt(5))*(y-sqrt(5)*z)).normal() Exception raised: Traceback (most recent call last): File "/home/artal/sage/src/sage/doctest/forker.py", line 715, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/artal/sage/src/sage/doctest/forker.py", line 1147, in compile_and_execute exec(compiled, globs) File "<doctest sage.interfaces.giac.Giac[8]>", line 1, in <module> ((y+z*sqrt(Integer(5)))*(y-sqrt(Integer(5))*z)).normal() ~^~~~~~~~~~~~~~~~~ File "sage/structure/element.pyx", line 1512, in sage.structure.element.Element.__mul__ return coercion_model.bin_op(left, right, mul) File "sage/structure/coerce.pyx", line 1236, in sage.structure.coerce.CoercionModel.bin_op return PyObject_CallObject(op, xy) File "sage/structure/element.pyx", line 1510, in sage.structure.element.Element.__mul__ return (<Element>left)._mul_(right) File "sage/structure/element.pyx", line 1556, in sage.structure.element.Element._mul_ return python_op(other) File "/home/artal/sage/src/sage/interfaces/interface.py", line 1600, in _mul_ return self._operation('*', right) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/interface.py", line 1471, in _operation P = self._check_valid() ^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/expect.py", line 1550, in _check_valid raise ValueError("The %s session in which this object was defined is no longer running." % P.name()) ValueError: The giac session in which this object was defined is no longer running. ********************************************************************** 1 item had failures: 3 of 15 in sage.interfaces.giac.Giac [182 tests, 3 failures, 2.10 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=159177512075622979747943355576924465951 src/sage/interfaces/giac.py # 3 doctests failed ---------------------------------------------------------------------- Total time for all tests: 7.1 seconds cpu time: 0.5 seconds cumulative wall time: 2.1 seconds Features detected for doctesting: ``` - `src/sage/calculus/tests.py`. ``` File "src/sage/calculus/tests.py", line 126, in sage.calculus.tests Failed example: integrate(x^x,x) Expected: integrate(x^x, x) Got: /usr/include/c++/14/bits/stl_vector.h:1130: std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = long long int; _Alloc = std::allocator<long long int>; reference = long long int&; size_type = long unsigned int]: Assertion '__n < this->size()' failed. integrate(x^x, x) ********************************************************************** 1 item had failures: 1 of 79 in sage.calculus.tests [78 tests, 1 failure, 1.44 s] ---------------------------------------------------------------------- sage -t --warn-long 41.6 --random- seed=253346199774111986807301801043024986436 src/sage/calculus/tests.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 1.5 seconds cpu time: 2.0 seconds cumulative wall time: 1.4 seconds Features detected for doctesting: ``` - `src/sage/rings/polynomial/groebner_fan.py`. There are 47 failed doctests, caused by `gfan`. ### :memo: Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. URL: sagemath#38358 Reported by: Enrique Manuel Artal Bartolo Reviewer(s): Matthias Köppe
vbraun
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Jul 31, 2024
<!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> This PR aims to be a continuation of sagemath#37833 in order to add more possible system packages and correct some other ones in `build/pkgs/*/distros/fedora.txt`. After a fresh installation I got some errors: - `src/sage/rings/lazy_series_ring.py`. The test passess without the PR. I am not sure which package is the cause. ``` File "src/sage/rings/lazy_series_ring.py", line 2008, in sage.rings.lazy_series_ring.LazyPowerSeriesRing.__init__ Failed example: TestSuite(L).run(skip=['_test_revert']) Expected nothing Got: Failure in _test_associativity: Traceback (most recent call last): File "/home/artal/sage/src/sage/misc/sage_unittest.py", line 298, in run test_method(tester=tester) File "/home/artal/sage/src/sage/categories/semigroups.py", line 123, in _test_associativity tester.assertEqual((x * y) * z, x * (y * z)) File "/usr/lib64/python3.12/unittest/case.py", line 885, in assertEqual assertion_func(first, second, msg=msg) File "/usr/lib64/python3.12/unittest/case.py", line 878, in _baseAssertEqual raise self.failureException(msg) AssertionError: s + ([61 chars]^4*t+2*s^2*t^3+5*s*t^4) + (s^7+3*s^5*t^2+2*s^4[27 chars],t)^8 != s + ([61 chars]^4*t+4*s^3*t^2+2*s^2*t^3+5*s*t^4) + (s^7+3*s^5[37 chars],t)^8 ------------------------------------------------------------ Failure in _test_distributivity: Traceback (most recent call last): File "/home/artal/sage/src/sage/misc/sage_unittest.py", line 298, in run test_method(tester=tester) File "/home/artal/sage/src/sage/categories/distributive_magmas_and _additive_magmas.py", line 83, in _test_distributivity tester.assertEqual((x + y) * z, (x * z) + (y * z)) File "/usr/lib64/python3.12/unittest/case.py", line 885, in assertEqual assertion_func(first, second, msg=msg) File "/usr/lib64/python3.12/unittest/case.py", line 878, in _baseAssertEqual raise self.failureException(msg) AssertionError: 2 + ([60 chars]3) + (s^5+5*s^4*t+4*s^3*t^2+4*s^2*t^3+5*s*t^4+[36 chars],t)^7 != 2 + ([60 chars]3) + 4*s^2*t^2 + (s^5+5*s^4*t+4*s^3*t^2+4*s^2*[48 chars],t)^7 ------------------------------------------------------------ The following tests failed: _test_associativity, _test_distributivity ********************************************************************** 1 item had failures: 1 of 33 in sage.rings.lazy_series_ring.LazyPowerSeriesRing.__init__ [685 tests, 1 failure, 15.80 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=128527404001182411276111307855871193848 src/sage/rings/lazy_series_ring.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 16.6 seconds cpu time: 15.8 seconds cumulative wall time: 15.8 seconds Features detected for doctesting: lrcalc_python,sage.libs.flint,sage.lib s.pari,sage.libs.singular,sage.modules,sage.rings.finite_rings,sage.ring s.number_field,sage.symbolic ``` - `src/sage/rings/polynomial/multi_polynomial_ideal.py`. Apparently `cddlib` is causing it. ``` File "src/sage/rings/polynomial/multi_polynomial_ideal.py", line 4192, in sage.rings.polynomial.multi_polynomial_ideal.NCPolynomialIdeal.groebn er_fan Failed example: g.reduced_groebner_bases() Exception raised: Traceback (most recent call last): File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1064, in reduced_groebner_bases return self.__reduced_groebner_bases ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'GroebnerFan' object has no attribute '_GroebnerFan__reduced_groebner_bases'. Did you mean: '_GroebnerFan__is_groebner_basis'? During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1015, in _gfan_reduced_groebner_bases return self.__gfan_reduced_groebner_bases ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'GroebnerFan' object has no attribute '_GroebnerFan__gfan_reduced_groebner_bases' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/artal/sage/src/sage/doctest/forker.py", line 715, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/artal/sage/src/sage/doctest/forker.py", line 1147, in compile_and_execute exec(compiled, globs) File "<doctest sage.rings.polynomial.multi_polynomial_ideal.NCPoly nomialIdeal.groebner_fan[3]>", line 1, in <module> g.reduced_groebner_bases() File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1066, in reduced_groebner_bases G = self._gfan_reduced_groebner_bases() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1017, in _gfan_reduced_groebner_bases B = self.gfan(cmd='bases') ^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1139, in gfan s = gfan(I, cmd, verbose=self.__verbose) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/misc/decorators.py", line 658, in wrapper return func(*args, **kwds) ^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/gfan.py", line 119, in __call__ raise RuntimeError(err) RuntimeError: Falling back on CddLib Falling back on CddLib ********************************************************************** 1 item had failures: 1 of 5 in sage.rings.polynomial.multi_polynomial_ideal.NCPolynomial Ideal.groebner_fan [984 tests, 1 failure, 5.50 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=196383766288019021986381945645510832135 src/sage/rings/polynomial/multi_polynomial_ideal.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 11.3 seconds cpu time: 5.3 seconds cumulative wall time: 5.5 seconds Features detected for doctesting: sage.combinat,sage.libs.flint,sage.lib s.singular,sage.modules,sage.plot,sage.rings.finite_rings,sage.rings.num ber_field,sage.symbolic ``` - `src/sage/interfaces/maxima_abstract.py`. The problem seems to be `maxima`. ``` File "src/sage/interfaces/maxima_abstract.py", line 161, in sage.interfaces.maxima_abstract.MaximaAbstract._command_runner Failed example: maxima._command_runner('describe', 'gcd') Expected: -- Function: gcd (<p_1>, <p_2>, <x_1>, ...) ... Got: <BLANKLINE> <BLANKLINE> -- Función: gcd (<p_1>, <p_2>, <x_1>, ...) Devuelve el máximo común divisor de <p_1> y <p_2>. La variable ‘gcd’ determiona qué algoritmo se va a utilizar. Asignándole a ‘gcd’ los valores ‘ez’, ‘subres’, ‘red’ o ‘spmod’, se seleccionan los algoritmos ‘ezgcd’, subresultante ‘prs’, reducido o modular, respectivamente. Si ‘gcd’ vale ‘false’ entonces ‘gcd(<p_1>, <p_2>, <x>)’ devolverá siempre 1 para cualquier <x>. Muchas funciones (por ejemplo, ‘ratsimp’, ‘factor’, etc.) hacen uso de ‘gcd’ implícitamente. En caso de polinomios homogéneos se recomienda darle a ‘gcd’ el valor ‘subres’. Para calcular un máximo común divisor en presencia de raíces, como en ‘gcd (<x>^2 - 2*sqrt(2)*<x> + 2, <x> - sqrt(2))’, la variable ‘algebraic’ debe igualarse a ‘true’ y ‘gcd’ no puede ser ‘ez’. <BLANKLINE> Se recomienda utilizar el algoritmo ‘subres’ en lugar de ‘red’, por ser aquél más moderno. <BLANKLINE> Si la variable ‘gcd’, cuyo valor por defecto es ‘spmod’, vale ‘false’, no se calculará el máximo común divisor cuando las expresiones se conviertan a su forma canónica (CRE), lo que redundará en ocasiones en mayor rapidez de cálculo. <BLANKLINE> There are also some inexact matches for `gcd'. Try `?? gcd' to see them. <BLANKLINE> true <BLANKLINE> ********************************************************************** File "src/sage/interfaces/maxima_abstract.py", line 198, in sage.interfaces.maxima_abstract.MaximaAbstract.help Failed example: maxima.help('gcd') Expected: -- Function: gcd (<p_1>, <p_2>, <x_1>, ...) ... Got: <BLANKLINE> <BLANKLINE> -- Función: gcd (<p_1>, <p_2>, <x_1>, ...) Devuelve el máximo común divisor de <p_1> y <p_2>. La variable ‘gcd’ determiona qué algoritmo se va a utilizar. Asignándole a ‘gcd’ los valores ‘ez’, ‘subres’, ‘red’ o ‘spmod’, se seleccionan los algoritmos ‘ezgcd’, subresultante ‘prs’, reducido o modular, respectivamente. Si ‘gcd’ vale ‘false’ entonces ‘gcd(<p_1>, <p_2>, <x>)’ devolverá siempre 1 para cualquier <x>. Muchas funciones (por ejemplo, ‘ratsimp’, ‘factor’, etc.) hacen uso de ‘gcd’ implícitamente. En caso de polinomios homogéneos se recomienda darle a ‘gcd’ el valor ‘subres’. Para calcular un máximo común divisor en presencia de raíces, como en ‘gcd (<x>^2 - 2*sqrt(2)*<x> + 2, <x> - sqrt(2))’, la variable ‘algebraic’ debe igualarse a ‘true’ y ‘gcd’ no puede ser ‘ez’. <BLANKLINE> Se recomienda utilizar el algoritmo ‘subres’ en lugar de ‘red’, por ser aquél más moderno. <BLANKLINE> Si la variable ‘gcd’, cuyo valor por defecto es ‘spmod’, vale ‘false’, no se calculará el máximo común divisor cuando las expresiones se conviertan a su forma canónica (CRE), lo que redundará en ocasiones en mayor rapidez de cálculo. <BLANKLINE> There are also some inexact matches for `gcd'. Try `?? gcd' to see them. <BLANKLINE> true <BLANKLINE> ********************************************************************** 2 items had failures: 1 of 2 in sage.interfaces.maxima_abstract.MaximaAbstract._command_runner 1 of 2 in sage.interfaces.maxima_abstract.MaximaAbstract.help [237 tests, 2 failures, 2.61 s] ---------------------------------------------------------------------- sage -t --random-seed=222682497766095343035925295278558065112 src/sage/interfaces/maxima_abstract.py # 2 doctests failed ---------------------------------------------------------------------- Total time for all tests: 7.7 seconds cpu time: 1.8 seconds cumulative wall time: 2.6 seconds Features detected for doctesting: sage.libs.pari ``` - `src/sage/interfaces/singular.py`. The problem is probably caused by `singular`: ``` File "src/sage/interfaces/singular.py", line 2326, in sage.interfaces.singular.SingularFunctionElement._instancedoc_ Failed example: 'matrix_expression' in A.nrows.__doc__ Expected: True Got: False ********************************************************************** File "src/sage/interfaces/singular.py", line 2425, in sage.interfaces.singular.get_docstring Failed example: 'groebner' in get_docstring('groebner') Expected: True Got: False ********************************************************************** File "src/sage/interfaces/singular.py", line 2427, in sage.interfaces.singular.get_docstring Failed example: 'standard.lib' in get_docstring('groebner') Expected: True Got: False ********************************************************************** 2 items had failures: 1 of 4 in sage.interfaces.singular.SingularFunctionElement._instancedoc_ 2 of 4 in sage.interfaces.singular.get_docstring [412 tests, 3 failures, 1.78 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=305672045870174292260177177950580332722 src/sage/interfaces/singular.py # 3 doctests failed ---------------------------------------------------------------------- Total time for all tests: 12.0 seconds cpu time: 0.6 seconds cumulative wall time: 1.8 seconds Features detected for doctesting: ``` - `src/sage/interfaces/giac.py`. The problem is caused by `giac`. ``` ile "src/sage/interfaces/giac.py", line 295, in sage.interfaces.giac.Giac Failed example: I1=(1/(cos(2*y)+cos(y))).integral(y,0,pi/4).simplify() Expected nothing Got: Giac crashed -- automatically restarting. ********************************************************************** File "src/sage/interfaces/giac.py", line 296, in sage.interfaces.giac.Giac Failed example: (I1-((-2*ln((sqrt(3)- 3*tan(1/8*pi))/(sqrt(3)+3*tan(1/8*pi)))*sqrt(3)- 3*tan(1/8*pi))/9)).normal() Expected: 0 Got: Giac crashed -- automatically restarting. sage96 ********************************************************************** File "src/sage/interfaces/giac.py", line 298, in sage.interfaces.giac.Giac Failed example: ((y+z*sqrt(5))*(y-sqrt(5)*z)).normal() Exception raised: Traceback (most recent call last): File "/home/artal/sage/src/sage/doctest/forker.py", line 715, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/artal/sage/src/sage/doctest/forker.py", line 1147, in compile_and_execute exec(compiled, globs) File "<doctest sage.interfaces.giac.Giac[8]>", line 1, in <module> ((y+z*sqrt(Integer(5)))*(y-sqrt(Integer(5))*z)).normal() ~^~~~~~~~~~~~~~~~~ File "sage/structure/element.pyx", line 1512, in sage.structure.element.Element.__mul__ return coercion_model.bin_op(left, right, mul) File "sage/structure/coerce.pyx", line 1236, in sage.structure.coerce.CoercionModel.bin_op return PyObject_CallObject(op, xy) File "sage/structure/element.pyx", line 1510, in sage.structure.element.Element.__mul__ return (<Element>left)._mul_(right) File "sage/structure/element.pyx", line 1556, in sage.structure.element.Element._mul_ return python_op(other) File "/home/artal/sage/src/sage/interfaces/interface.py", line 1600, in _mul_ return self._operation('*', right) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/interface.py", line 1471, in _operation P = self._check_valid() ^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/expect.py", line 1550, in _check_valid raise ValueError("The %s session in which this object was defined is no longer running." % P.name()) ValueError: The giac session in which this object was defined is no longer running. ********************************************************************** 1 item had failures: 3 of 15 in sage.interfaces.giac.Giac [182 tests, 3 failures, 2.10 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=159177512075622979747943355576924465951 src/sage/interfaces/giac.py # 3 doctests failed ---------------------------------------------------------------------- Total time for all tests: 7.1 seconds cpu time: 0.5 seconds cumulative wall time: 2.1 seconds Features detected for doctesting: ``` - `src/sage/calculus/tests.py`. ``` File "src/sage/calculus/tests.py", line 126, in sage.calculus.tests Failed example: integrate(x^x,x) Expected: integrate(x^x, x) Got: /usr/include/c++/14/bits/stl_vector.h:1130: std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = long long int; _Alloc = std::allocator<long long int>; reference = long long int&; size_type = long unsigned int]: Assertion '__n < this->size()' failed. integrate(x^x, x) ********************************************************************** 1 item had failures: 1 of 79 in sage.calculus.tests [78 tests, 1 failure, 1.44 s] ---------------------------------------------------------------------- sage -t --warn-long 41.6 --random- seed=253346199774111986807301801043024986436 src/sage/calculus/tests.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 1.5 seconds cpu time: 2.0 seconds cumulative wall time: 1.4 seconds Features detected for doctesting: ``` - `src/sage/rings/polynomial/groebner_fan.py`. There are 47 failed doctests, caused by `gfan`. ### :memo: Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. URL: sagemath#38358 Reported by: Enrique Manuel Artal Bartolo Reviewer(s): Matthias Köppe
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<!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> This PR aims to be a continuation of sagemath#37833 in order to add more possible system packages and correct some other ones in `build/pkgs/*/distros/fedora.txt`. After a fresh installation I got some errors: - `src/sage/rings/lazy_series_ring.py`. The test passess without the PR. I am not sure which package is the cause. ``` File "src/sage/rings/lazy_series_ring.py", line 2008, in sage.rings.lazy_series_ring.LazyPowerSeriesRing.__init__ Failed example: TestSuite(L).run(skip=['_test_revert']) Expected nothing Got: Failure in _test_associativity: Traceback (most recent call last): File "/home/artal/sage/src/sage/misc/sage_unittest.py", line 298, in run test_method(tester=tester) File "/home/artal/sage/src/sage/categories/semigroups.py", line 123, in _test_associativity tester.assertEqual((x * y) * z, x * (y * z)) File "/usr/lib64/python3.12/unittest/case.py", line 885, in assertEqual assertion_func(first, second, msg=msg) File "/usr/lib64/python3.12/unittest/case.py", line 878, in _baseAssertEqual raise self.failureException(msg) AssertionError: s + ([61 chars]^4*t+2*s^2*t^3+5*s*t^4) + (s^7+3*s^5*t^2+2*s^4[27 chars],t)^8 != s + ([61 chars]^4*t+4*s^3*t^2+2*s^2*t^3+5*s*t^4) + (s^7+3*s^5[37 chars],t)^8 ------------------------------------------------------------ Failure in _test_distributivity: Traceback (most recent call last): File "/home/artal/sage/src/sage/misc/sage_unittest.py", line 298, in run test_method(tester=tester) File "/home/artal/sage/src/sage/categories/distributive_magmas_and _additive_magmas.py", line 83, in _test_distributivity tester.assertEqual((x + y) * z, (x * z) + (y * z)) File "/usr/lib64/python3.12/unittest/case.py", line 885, in assertEqual assertion_func(first, second, msg=msg) File "/usr/lib64/python3.12/unittest/case.py", line 878, in _baseAssertEqual raise self.failureException(msg) AssertionError: 2 + ([60 chars]3) + (s^5+5*s^4*t+4*s^3*t^2+4*s^2*t^3+5*s*t^4+[36 chars],t)^7 != 2 + ([60 chars]3) + 4*s^2*t^2 + (s^5+5*s^4*t+4*s^3*t^2+4*s^2*[48 chars],t)^7 ------------------------------------------------------------ The following tests failed: _test_associativity, _test_distributivity ********************************************************************** 1 item had failures: 1 of 33 in sage.rings.lazy_series_ring.LazyPowerSeriesRing.__init__ [685 tests, 1 failure, 15.80 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=128527404001182411276111307855871193848 src/sage/rings/lazy_series_ring.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 16.6 seconds cpu time: 15.8 seconds cumulative wall time: 15.8 seconds Features detected for doctesting: lrcalc_python,sage.libs.flint,sage.lib s.pari,sage.libs.singular,sage.modules,sage.rings.finite_rings,sage.ring s.number_field,sage.symbolic ``` - `src/sage/rings/polynomial/multi_polynomial_ideal.py`. Apparently `cddlib` is causing it. ``` File "src/sage/rings/polynomial/multi_polynomial_ideal.py", line 4192, in sage.rings.polynomial.multi_polynomial_ideal.NCPolynomialIdeal.groebn er_fan Failed example: g.reduced_groebner_bases() Exception raised: Traceback (most recent call last): File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1064, in reduced_groebner_bases return self.__reduced_groebner_bases ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'GroebnerFan' object has no attribute '_GroebnerFan__reduced_groebner_bases'. Did you mean: '_GroebnerFan__is_groebner_basis'? During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1015, in _gfan_reduced_groebner_bases return self.__gfan_reduced_groebner_bases ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'GroebnerFan' object has no attribute '_GroebnerFan__gfan_reduced_groebner_bases' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/artal/sage/src/sage/doctest/forker.py", line 715, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/artal/sage/src/sage/doctest/forker.py", line 1147, in compile_and_execute exec(compiled, globs) File "<doctest sage.rings.polynomial.multi_polynomial_ideal.NCPoly nomialIdeal.groebner_fan[3]>", line 1, in <module> g.reduced_groebner_bases() File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1066, in reduced_groebner_bases G = self._gfan_reduced_groebner_bases() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1017, in _gfan_reduced_groebner_bases B = self.gfan(cmd='bases') ^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1139, in gfan s = gfan(I, cmd, verbose=self.__verbose) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/misc/decorators.py", line 658, in wrapper return func(*args, **kwds) ^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/gfan.py", line 119, in __call__ raise RuntimeError(err) RuntimeError: Falling back on CddLib Falling back on CddLib ********************************************************************** 1 item had failures: 1 of 5 in sage.rings.polynomial.multi_polynomial_ideal.NCPolynomial Ideal.groebner_fan [984 tests, 1 failure, 5.50 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=196383766288019021986381945645510832135 src/sage/rings/polynomial/multi_polynomial_ideal.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 11.3 seconds cpu time: 5.3 seconds cumulative wall time: 5.5 seconds Features detected for doctesting: sage.combinat,sage.libs.flint,sage.lib s.singular,sage.modules,sage.plot,sage.rings.finite_rings,sage.rings.num ber_field,sage.symbolic ``` - `src/sage/interfaces/maxima_abstract.py`. The problem seems to be `maxima`. ``` File "src/sage/interfaces/maxima_abstract.py", line 161, in sage.interfaces.maxima_abstract.MaximaAbstract._command_runner Failed example: maxima._command_runner('describe', 'gcd') Expected: -- Function: gcd (<p_1>, <p_2>, <x_1>, ...) ... Got: <BLANKLINE> <BLANKLINE> -- Función: gcd (<p_1>, <p_2>, <x_1>, ...) Devuelve el máximo común divisor de <p_1> y <p_2>. La variable ‘gcd’ determiona qué algoritmo se va a utilizar. Asignándole a ‘gcd’ los valores ‘ez’, ‘subres’, ‘red’ o ‘spmod’, se seleccionan los algoritmos ‘ezgcd’, subresultante ‘prs’, reducido o modular, respectivamente. Si ‘gcd’ vale ‘false’ entonces ‘gcd(<p_1>, <p_2>, <x>)’ devolverá siempre 1 para cualquier <x>. Muchas funciones (por ejemplo, ‘ratsimp’, ‘factor’, etc.) hacen uso de ‘gcd’ implícitamente. En caso de polinomios homogéneos se recomienda darle a ‘gcd’ el valor ‘subres’. Para calcular un máximo común divisor en presencia de raíces, como en ‘gcd (<x>^2 - 2*sqrt(2)*<x> + 2, <x> - sqrt(2))’, la variable ‘algebraic’ debe igualarse a ‘true’ y ‘gcd’ no puede ser ‘ez’. <BLANKLINE> Se recomienda utilizar el algoritmo ‘subres’ en lugar de ‘red’, por ser aquél más moderno. <BLANKLINE> Si la variable ‘gcd’, cuyo valor por defecto es ‘spmod’, vale ‘false’, no se calculará el máximo común divisor cuando las expresiones se conviertan a su forma canónica (CRE), lo que redundará en ocasiones en mayor rapidez de cálculo. <BLANKLINE> There are also some inexact matches for `gcd'. Try `?? gcd' to see them. <BLANKLINE> true <BLANKLINE> ********************************************************************** File "src/sage/interfaces/maxima_abstract.py", line 198, in sage.interfaces.maxima_abstract.MaximaAbstract.help Failed example: maxima.help('gcd') Expected: -- Function: gcd (<p_1>, <p_2>, <x_1>, ...) ... Got: <BLANKLINE> <BLANKLINE> -- Función: gcd (<p_1>, <p_2>, <x_1>, ...) Devuelve el máximo común divisor de <p_1> y <p_2>. La variable ‘gcd’ determiona qué algoritmo se va a utilizar. Asignándole a ‘gcd’ los valores ‘ez’, ‘subres’, ‘red’ o ‘spmod’, se seleccionan los algoritmos ‘ezgcd’, subresultante ‘prs’, reducido o modular, respectivamente. Si ‘gcd’ vale ‘false’ entonces ‘gcd(<p_1>, <p_2>, <x>)’ devolverá siempre 1 para cualquier <x>. Muchas funciones (por ejemplo, ‘ratsimp’, ‘factor’, etc.) hacen uso de ‘gcd’ implícitamente. En caso de polinomios homogéneos se recomienda darle a ‘gcd’ el valor ‘subres’. Para calcular un máximo común divisor en presencia de raíces, como en ‘gcd (<x>^2 - 2*sqrt(2)*<x> + 2, <x> - sqrt(2))’, la variable ‘algebraic’ debe igualarse a ‘true’ y ‘gcd’ no puede ser ‘ez’. <BLANKLINE> Se recomienda utilizar el algoritmo ‘subres’ en lugar de ‘red’, por ser aquél más moderno. <BLANKLINE> Si la variable ‘gcd’, cuyo valor por defecto es ‘spmod’, vale ‘false’, no se calculará el máximo común divisor cuando las expresiones se conviertan a su forma canónica (CRE), lo que redundará en ocasiones en mayor rapidez de cálculo. <BLANKLINE> There are also some inexact matches for `gcd'. Try `?? gcd' to see them. <BLANKLINE> true <BLANKLINE> ********************************************************************** 2 items had failures: 1 of 2 in sage.interfaces.maxima_abstract.MaximaAbstract._command_runner 1 of 2 in sage.interfaces.maxima_abstract.MaximaAbstract.help [237 tests, 2 failures, 2.61 s] ---------------------------------------------------------------------- sage -t --random-seed=222682497766095343035925295278558065112 src/sage/interfaces/maxima_abstract.py # 2 doctests failed ---------------------------------------------------------------------- Total time for all tests: 7.7 seconds cpu time: 1.8 seconds cumulative wall time: 2.6 seconds Features detected for doctesting: sage.libs.pari ``` - `src/sage/interfaces/singular.py`. The problem is probably caused by `singular`: ``` File "src/sage/interfaces/singular.py", line 2326, in sage.interfaces.singular.SingularFunctionElement._instancedoc_ Failed example: 'matrix_expression' in A.nrows.__doc__ Expected: True Got: False ********************************************************************** File "src/sage/interfaces/singular.py", line 2425, in sage.interfaces.singular.get_docstring Failed example: 'groebner' in get_docstring('groebner') Expected: True Got: False ********************************************************************** File "src/sage/interfaces/singular.py", line 2427, in sage.interfaces.singular.get_docstring Failed example: 'standard.lib' in get_docstring('groebner') Expected: True Got: False ********************************************************************** 2 items had failures: 1 of 4 in sage.interfaces.singular.SingularFunctionElement._instancedoc_ 2 of 4 in sage.interfaces.singular.get_docstring [412 tests, 3 failures, 1.78 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=305672045870174292260177177950580332722 src/sage/interfaces/singular.py # 3 doctests failed ---------------------------------------------------------------------- Total time for all tests: 12.0 seconds cpu time: 0.6 seconds cumulative wall time: 1.8 seconds Features detected for doctesting: ``` - `src/sage/interfaces/giac.py`. The problem is caused by `giac`. ``` ile "src/sage/interfaces/giac.py", line 295, in sage.interfaces.giac.Giac Failed example: I1=(1/(cos(2*y)+cos(y))).integral(y,0,pi/4).simplify() Expected nothing Got: Giac crashed -- automatically restarting. ********************************************************************** File "src/sage/interfaces/giac.py", line 296, in sage.interfaces.giac.Giac Failed example: (I1-((-2*ln((sqrt(3)- 3*tan(1/8*pi))/(sqrt(3)+3*tan(1/8*pi)))*sqrt(3)- 3*tan(1/8*pi))/9)).normal() Expected: 0 Got: Giac crashed -- automatically restarting. sage96 ********************************************************************** File "src/sage/interfaces/giac.py", line 298, in sage.interfaces.giac.Giac Failed example: ((y+z*sqrt(5))*(y-sqrt(5)*z)).normal() Exception raised: Traceback (most recent call last): File "/home/artal/sage/src/sage/doctest/forker.py", line 715, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/artal/sage/src/sage/doctest/forker.py", line 1147, in compile_and_execute exec(compiled, globs) File "<doctest sage.interfaces.giac.Giac[8]>", line 1, in <module> ((y+z*sqrt(Integer(5)))*(y-sqrt(Integer(5))*z)).normal() ~^~~~~~~~~~~~~~~~~ File "sage/structure/element.pyx", line 1512, in sage.structure.element.Element.__mul__ return coercion_model.bin_op(left, right, mul) File "sage/structure/coerce.pyx", line 1236, in sage.structure.coerce.CoercionModel.bin_op return PyObject_CallObject(op, xy) File "sage/structure/element.pyx", line 1510, in sage.structure.element.Element.__mul__ return (<Element>left)._mul_(right) File "sage/structure/element.pyx", line 1556, in sage.structure.element.Element._mul_ return python_op(other) File "/home/artal/sage/src/sage/interfaces/interface.py", line 1600, in _mul_ return self._operation('*', right) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/interface.py", line 1471, in _operation P = self._check_valid() ^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/expect.py", line 1550, in _check_valid raise ValueError("The %s session in which this object was defined is no longer running." % P.name()) ValueError: The giac session in which this object was defined is no longer running. ********************************************************************** 1 item had failures: 3 of 15 in sage.interfaces.giac.Giac [182 tests, 3 failures, 2.10 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=159177512075622979747943355576924465951 src/sage/interfaces/giac.py # 3 doctests failed ---------------------------------------------------------------------- Total time for all tests: 7.1 seconds cpu time: 0.5 seconds cumulative wall time: 2.1 seconds Features detected for doctesting: ``` - `src/sage/calculus/tests.py`. ``` File "src/sage/calculus/tests.py", line 126, in sage.calculus.tests Failed example: integrate(x^x,x) Expected: integrate(x^x, x) Got: /usr/include/c++/14/bits/stl_vector.h:1130: std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = long long int; _Alloc = std::allocator<long long int>; reference = long long int&; size_type = long unsigned int]: Assertion '__n < this->size()' failed. integrate(x^x, x) ********************************************************************** 1 item had failures: 1 of 79 in sage.calculus.tests [78 tests, 1 failure, 1.44 s] ---------------------------------------------------------------------- sage -t --warn-long 41.6 --random- seed=253346199774111986807301801043024986436 src/sage/calculus/tests.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 1.5 seconds cpu time: 2.0 seconds cumulative wall time: 1.4 seconds Features detected for doctesting: ``` - `src/sage/rings/polynomial/groebner_fan.py`. There are 47 failed doctests, caused by `gfan`. ### :memo: Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. URL: sagemath#38358 Reported by: Enrique Manuel Artal Bartolo Reviewer(s): Matthias Köppe
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<!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> This PR aims to be a continuation of sagemath#37833 in order to add more possible system packages and correct some other ones in `build/pkgs/*/distros/fedora.txt`. After a fresh installation I got some errors: - `src/sage/rings/lazy_series_ring.py`. The test passess without the PR. I am not sure which package is the cause. ``` File "src/sage/rings/lazy_series_ring.py", line 2008, in sage.rings.lazy_series_ring.LazyPowerSeriesRing.__init__ Failed example: TestSuite(L).run(skip=['_test_revert']) Expected nothing Got: Failure in _test_associativity: Traceback (most recent call last): File "/home/artal/sage/src/sage/misc/sage_unittest.py", line 298, in run test_method(tester=tester) File "/home/artal/sage/src/sage/categories/semigroups.py", line 123, in _test_associativity tester.assertEqual((x * y) * z, x * (y * z)) File "/usr/lib64/python3.12/unittest/case.py", line 885, in assertEqual assertion_func(first, second, msg=msg) File "/usr/lib64/python3.12/unittest/case.py", line 878, in _baseAssertEqual raise self.failureException(msg) AssertionError: s + ([61 chars]^4*t+2*s^2*t^3+5*s*t^4) + (s^7+3*s^5*t^2+2*s^4[27 chars],t)^8 != s + ([61 chars]^4*t+4*s^3*t^2+2*s^2*t^3+5*s*t^4) + (s^7+3*s^5[37 chars],t)^8 ------------------------------------------------------------ Failure in _test_distributivity: Traceback (most recent call last): File "/home/artal/sage/src/sage/misc/sage_unittest.py", line 298, in run test_method(tester=tester) File "/home/artal/sage/src/sage/categories/distributive_magmas_and _additive_magmas.py", line 83, in _test_distributivity tester.assertEqual((x + y) * z, (x * z) + (y * z)) File "/usr/lib64/python3.12/unittest/case.py", line 885, in assertEqual assertion_func(first, second, msg=msg) File "/usr/lib64/python3.12/unittest/case.py", line 878, in _baseAssertEqual raise self.failureException(msg) AssertionError: 2 + ([60 chars]3) + (s^5+5*s^4*t+4*s^3*t^2+4*s^2*t^3+5*s*t^4+[36 chars],t)^7 != 2 + ([60 chars]3) + 4*s^2*t^2 + (s^5+5*s^4*t+4*s^3*t^2+4*s^2*[48 chars],t)^7 ------------------------------------------------------------ The following tests failed: _test_associativity, _test_distributivity ********************************************************************** 1 item had failures: 1 of 33 in sage.rings.lazy_series_ring.LazyPowerSeriesRing.__init__ [685 tests, 1 failure, 15.80 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=128527404001182411276111307855871193848 src/sage/rings/lazy_series_ring.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 16.6 seconds cpu time: 15.8 seconds cumulative wall time: 15.8 seconds Features detected for doctesting: lrcalc_python,sage.libs.flint,sage.lib s.pari,sage.libs.singular,sage.modules,sage.rings.finite_rings,sage.ring s.number_field,sage.symbolic ``` - `src/sage/rings/polynomial/multi_polynomial_ideal.py`. Apparently `cddlib` is causing it. ``` File "src/sage/rings/polynomial/multi_polynomial_ideal.py", line 4192, in sage.rings.polynomial.multi_polynomial_ideal.NCPolynomialIdeal.groebn er_fan Failed example: g.reduced_groebner_bases() Exception raised: Traceback (most recent call last): File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1064, in reduced_groebner_bases return self.__reduced_groebner_bases ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'GroebnerFan' object has no attribute '_GroebnerFan__reduced_groebner_bases'. Did you mean: '_GroebnerFan__is_groebner_basis'? During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1015, in _gfan_reduced_groebner_bases return self.__gfan_reduced_groebner_bases ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: 'GroebnerFan' object has no attribute '_GroebnerFan__gfan_reduced_groebner_bases' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/artal/sage/src/sage/doctest/forker.py", line 715, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/artal/sage/src/sage/doctest/forker.py", line 1147, in compile_and_execute exec(compiled, globs) File "<doctest sage.rings.polynomial.multi_polynomial_ideal.NCPoly nomialIdeal.groebner_fan[3]>", line 1, in <module> g.reduced_groebner_bases() File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1066, in reduced_groebner_bases G = self._gfan_reduced_groebner_bases() ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1017, in _gfan_reduced_groebner_bases B = self.gfan(cmd='bases') ^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/rings/polynomial/groebner_fan.py", line 1139, in gfan s = gfan(I, cmd, verbose=self.__verbose) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/misc/decorators.py", line 658, in wrapper return func(*args, **kwds) ^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/gfan.py", line 119, in __call__ raise RuntimeError(err) RuntimeError: Falling back on CddLib Falling back on CddLib ********************************************************************** 1 item had failures: 1 of 5 in sage.rings.polynomial.multi_polynomial_ideal.NCPolynomial Ideal.groebner_fan [984 tests, 1 failure, 5.50 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=196383766288019021986381945645510832135 src/sage/rings/polynomial/multi_polynomial_ideal.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 11.3 seconds cpu time: 5.3 seconds cumulative wall time: 5.5 seconds Features detected for doctesting: sage.combinat,sage.libs.flint,sage.lib s.singular,sage.modules,sage.plot,sage.rings.finite_rings,sage.rings.num ber_field,sage.symbolic ``` - `src/sage/interfaces/maxima_abstract.py`. The problem seems to be `maxima`. ``` File "src/sage/interfaces/maxima_abstract.py", line 161, in sage.interfaces.maxima_abstract.MaximaAbstract._command_runner Failed example: maxima._command_runner('describe', 'gcd') Expected: -- Function: gcd (<p_1>, <p_2>, <x_1>, ...) ... Got: <BLANKLINE> <BLANKLINE> -- Función: gcd (<p_1>, <p_2>, <x_1>, ...) Devuelve el máximo común divisor de <p_1> y <p_2>. La variable ‘gcd’ determiona qué algoritmo se va a utilizar. Asignándole a ‘gcd’ los valores ‘ez’, ‘subres’, ‘red’ o ‘spmod’, se seleccionan los algoritmos ‘ezgcd’, subresultante ‘prs’, reducido o modular, respectivamente. Si ‘gcd’ vale ‘false’ entonces ‘gcd(<p_1>, <p_2>, <x>)’ devolverá siempre 1 para cualquier <x>. Muchas funciones (por ejemplo, ‘ratsimp’, ‘factor’, etc.) hacen uso de ‘gcd’ implícitamente. En caso de polinomios homogéneos se recomienda darle a ‘gcd’ el valor ‘subres’. Para calcular un máximo común divisor en presencia de raíces, como en ‘gcd (<x>^2 - 2*sqrt(2)*<x> + 2, <x> - sqrt(2))’, la variable ‘algebraic’ debe igualarse a ‘true’ y ‘gcd’ no puede ser ‘ez’. <BLANKLINE> Se recomienda utilizar el algoritmo ‘subres’ en lugar de ‘red’, por ser aquél más moderno. <BLANKLINE> Si la variable ‘gcd’, cuyo valor por defecto es ‘spmod’, vale ‘false’, no se calculará el máximo común divisor cuando las expresiones se conviertan a su forma canónica (CRE), lo que redundará en ocasiones en mayor rapidez de cálculo. <BLANKLINE> There are also some inexact matches for `gcd'. Try `?? gcd' to see them. <BLANKLINE> true <BLANKLINE> ********************************************************************** File "src/sage/interfaces/maxima_abstract.py", line 198, in sage.interfaces.maxima_abstract.MaximaAbstract.help Failed example: maxima.help('gcd') Expected: -- Function: gcd (<p_1>, <p_2>, <x_1>, ...) ... Got: <BLANKLINE> <BLANKLINE> -- Función: gcd (<p_1>, <p_2>, <x_1>, ...) Devuelve el máximo común divisor de <p_1> y <p_2>. La variable ‘gcd’ determiona qué algoritmo se va a utilizar. Asignándole a ‘gcd’ los valores ‘ez’, ‘subres’, ‘red’ o ‘spmod’, se seleccionan los algoritmos ‘ezgcd’, subresultante ‘prs’, reducido o modular, respectivamente. Si ‘gcd’ vale ‘false’ entonces ‘gcd(<p_1>, <p_2>, <x>)’ devolverá siempre 1 para cualquier <x>. Muchas funciones (por ejemplo, ‘ratsimp’, ‘factor’, etc.) hacen uso de ‘gcd’ implícitamente. En caso de polinomios homogéneos se recomienda darle a ‘gcd’ el valor ‘subres’. Para calcular un máximo común divisor en presencia de raíces, como en ‘gcd (<x>^2 - 2*sqrt(2)*<x> + 2, <x> - sqrt(2))’, la variable ‘algebraic’ debe igualarse a ‘true’ y ‘gcd’ no puede ser ‘ez’. <BLANKLINE> Se recomienda utilizar el algoritmo ‘subres’ en lugar de ‘red’, por ser aquél más moderno. <BLANKLINE> Si la variable ‘gcd’, cuyo valor por defecto es ‘spmod’, vale ‘false’, no se calculará el máximo común divisor cuando las expresiones se conviertan a su forma canónica (CRE), lo que redundará en ocasiones en mayor rapidez de cálculo. <BLANKLINE> There are also some inexact matches for `gcd'. Try `?? gcd' to see them. <BLANKLINE> true <BLANKLINE> ********************************************************************** 2 items had failures: 1 of 2 in sage.interfaces.maxima_abstract.MaximaAbstract._command_runner 1 of 2 in sage.interfaces.maxima_abstract.MaximaAbstract.help [237 tests, 2 failures, 2.61 s] ---------------------------------------------------------------------- sage -t --random-seed=222682497766095343035925295278558065112 src/sage/interfaces/maxima_abstract.py # 2 doctests failed ---------------------------------------------------------------------- Total time for all tests: 7.7 seconds cpu time: 1.8 seconds cumulative wall time: 2.6 seconds Features detected for doctesting: sage.libs.pari ``` - `src/sage/interfaces/singular.py`. The problem is probably caused by `singular`: ``` File "src/sage/interfaces/singular.py", line 2326, in sage.interfaces.singular.SingularFunctionElement._instancedoc_ Failed example: 'matrix_expression' in A.nrows.__doc__ Expected: True Got: False ********************************************************************** File "src/sage/interfaces/singular.py", line 2425, in sage.interfaces.singular.get_docstring Failed example: 'groebner' in get_docstring('groebner') Expected: True Got: False ********************************************************************** File "src/sage/interfaces/singular.py", line 2427, in sage.interfaces.singular.get_docstring Failed example: 'standard.lib' in get_docstring('groebner') Expected: True Got: False ********************************************************************** 2 items had failures: 1 of 4 in sage.interfaces.singular.SingularFunctionElement._instancedoc_ 2 of 4 in sage.interfaces.singular.get_docstring [412 tests, 3 failures, 1.78 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=305672045870174292260177177950580332722 src/sage/interfaces/singular.py # 3 doctests failed ---------------------------------------------------------------------- Total time for all tests: 12.0 seconds cpu time: 0.6 seconds cumulative wall time: 1.8 seconds Features detected for doctesting: ``` - `src/sage/interfaces/giac.py`. The problem is caused by `giac`. ``` ile "src/sage/interfaces/giac.py", line 295, in sage.interfaces.giac.Giac Failed example: I1=(1/(cos(2*y)+cos(y))).integral(y,0,pi/4).simplify() Expected nothing Got: Giac crashed -- automatically restarting. ********************************************************************** File "src/sage/interfaces/giac.py", line 296, in sage.interfaces.giac.Giac Failed example: (I1-((-2*ln((sqrt(3)- 3*tan(1/8*pi))/(sqrt(3)+3*tan(1/8*pi)))*sqrt(3)- 3*tan(1/8*pi))/9)).normal() Expected: 0 Got: Giac crashed -- automatically restarting. sage96 ********************************************************************** File "src/sage/interfaces/giac.py", line 298, in sage.interfaces.giac.Giac Failed example: ((y+z*sqrt(5))*(y-sqrt(5)*z)).normal() Exception raised: Traceback (most recent call last): File "/home/artal/sage/src/sage/doctest/forker.py", line 715, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/artal/sage/src/sage/doctest/forker.py", line 1147, in compile_and_execute exec(compiled, globs) File "<doctest sage.interfaces.giac.Giac[8]>", line 1, in <module> ((y+z*sqrt(Integer(5)))*(y-sqrt(Integer(5))*z)).normal() ~^~~~~~~~~~~~~~~~~ File "sage/structure/element.pyx", line 1512, in sage.structure.element.Element.__mul__ return coercion_model.bin_op(left, right, mul) File "sage/structure/coerce.pyx", line 1236, in sage.structure.coerce.CoercionModel.bin_op return PyObject_CallObject(op, xy) File "sage/structure/element.pyx", line 1510, in sage.structure.element.Element.__mul__ return (<Element>left)._mul_(right) File "sage/structure/element.pyx", line 1556, in sage.structure.element.Element._mul_ return python_op(other) File "/home/artal/sage/src/sage/interfaces/interface.py", line 1600, in _mul_ return self._operation('*', right) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/interface.py", line 1471, in _operation P = self._check_valid() ^^^^^^^^^^^^^^^^^^^ File "/home/artal/sage/src/sage/interfaces/expect.py", line 1550, in _check_valid raise ValueError("The %s session in which this object was defined is no longer running." % P.name()) ValueError: The giac session in which this object was defined is no longer running. ********************************************************************** 1 item had failures: 3 of 15 in sage.interfaces.giac.Giac [182 tests, 3 failures, 2.10 s] ---------------------------------------------------------------------- sage -t --warn-long 22.2 --random- seed=159177512075622979747943355576924465951 src/sage/interfaces/giac.py # 3 doctests failed ---------------------------------------------------------------------- Total time for all tests: 7.1 seconds cpu time: 0.5 seconds cumulative wall time: 2.1 seconds Features detected for doctesting: ``` - `src/sage/calculus/tests.py`. ``` File "src/sage/calculus/tests.py", line 126, in sage.calculus.tests Failed example: integrate(x^x,x) Expected: integrate(x^x, x) Got: /usr/include/c++/14/bits/stl_vector.h:1130: std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = long long int; _Alloc = std::allocator<long long int>; reference = long long int&; size_type = long unsigned int]: Assertion '__n < this->size()' failed. integrate(x^x, x) ********************************************************************** 1 item had failures: 1 of 79 in sage.calculus.tests [78 tests, 1 failure, 1.44 s] ---------------------------------------------------------------------- sage -t --warn-long 41.6 --random- seed=253346199774111986807301801043024986436 src/sage/calculus/tests.py # 1 doctest failed ---------------------------------------------------------------------- Total time for all tests: 1.5 seconds cpu time: 2.0 seconds cumulative wall time: 1.4 seconds Features detected for doctesting: ``` - `src/sage/rings/polynomial/groebner_fan.py`. There are 47 failed doctests, caused by `gfan`. ### :memo: Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. URL: sagemath#38358 Reported by: Enrique Manuel Artal Bartolo Reviewer(s): Matthias Köppe
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📝 Checklist
⌛ Dependencies