updated paths #778

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Linux test

	on: push

	jobs:
	build:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.10"]

	steps:

	- name: Checkout github repo including lfs files
	uses: actions/checkout@v2
	with:
	lfs: true

	- name: Setup miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true
	miniforge-variant: Mambaforge
	channels: conda-forge # defaults automatically added
	python-version: ${{ matrix.python-version }}
	activate-environment: geofabrics
	environment-file: environment_linux.yml
	use-mamba: true
	auto-activate-base: false

	- name: Install test dependencies
	run: \|
	mamba install flake8 pytest


	- name: Create .env file with API keys
	env:
	ENV_BASE64: ${{ secrets.ENV_BASE64 }}
	run: \|
	echo import .env file from secrets and regenerate the file
	echo $ENV_BASE64 \| base64 -d > .env


	- name: Run lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics


	- name: Run tests with pytest
	run: \|
	pytest

Provide feedback