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@populationgenomics

Centre for Population Genomics

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  1. cpg-cost-control cpg-cost-control Public

    A Cloud Function to handle GCP billing budget notifications.

    Python 6 3

  2. production-pipelines production-pipelines Public

    Genomics workflows for CPG using Hail Batch

    Python 5 1

  3. talos talos Public

    Rare Disease variant prioritisation MVP

    Python 5 4

  4. cuKING cuKING Public

    CUDA-based KING relatedness estimation

    Cuda 5

  5. seqr seqr Public

    Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics

    Python 3 1

  6. cpg-infrastructure cpg-infrastructure Public

    This repository is used to manage the infrastructure at the CPG

    Python 3 1

Repositories

Showing 10 of 61 repositories
  • production-pipelines Public

    Genomics workflows for CPG using Hail Batch

    populationgenomics/production-pipelines’s past year of commit activity
    Python 5 MIT 1 48 46 Updated Oct 10, 2024
  • saige-tenk10k Public

    Hail batch pipeline to run SAIGE on CPG's GCP

    populationgenomics/saige-tenk10k’s past year of commit activity
    Python 0 MIT 0 5 2 Updated Oct 10, 2024
  • seqr Public Forked from broadinstitute/seqr

    web-based analysis tool for rare disease genomics

    populationgenomics/seqr’s past year of commit activity
    Python 3 AGPL-3.0 89 30 7 Updated Oct 10, 2024
  • talos Public

    Rare Disease variant prioritisation MVP

    populationgenomics/talos’s past year of commit activity
    Python 5 MIT 4 9 2 Updated Oct 10, 2024
  • images Public

    Reusable single-software docker images

    populationgenomics/images’s past year of commit activity
    Dockerfile 1 MIT 1 2 8 Updated Oct 9, 2024
  • metamist Public

    Sample level metadata system

    populationgenomics/metamist’s past year of commit activity
    Python 1 MIT 1 40 24 Updated Oct 9, 2024
  • cpg-infrastructure Public

    This repository is used to manage the infrastructure at the CPG

    populationgenomics/cpg-infrastructure’s past year of commit activity
    Python 3 MIT 1 6 (1 issue needs help) 4 Updated Oct 9, 2024
  • hail Public Forked from hail-is/hail

    Scalable genomic data analysis.

    populationgenomics/hail’s past year of commit activity
    Python 1 MIT 247 3 1 Updated Oct 8, 2024
  • ClinvArbitration Public

    A side-project from the AIP, containing the code, logic, and documentation for the ClinVar consequence reassessment process in use at the CPG

    populationgenomics/ClinvArbitration’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Oct 8, 2024
  • gnomad-browser Public Forked from broadinstitute/gnomad-browser

    Explore gnomAD datasets on the web

    populationgenomics/gnomad-browser’s past year of commit activity
    TypeScript 0 MIT 43 0 0 Updated Oct 8, 2024
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