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  1. ALICE ALICE Public

    Detecting TCR involved in immune responses from single RepSeq datasets

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    T cell receptor amino acid sequence probability estimation.

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  3. reverse_epitope_discovery reverse_epitope_discovery Public

    Data and code for Rosati, Pogorelyy, Minervina et al 2021.

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  4. Minervina_COVID Minervina_COVID Public

    Data for Minervina et. al 2020 paper on COVID-19

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  5. COVID_vax_CD8 COVID_vax_CD8 Public

    Data and scripts for study Minervina, Pogorelyy et al. 2021

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  6. ALICE_sample_data ALICE_sample_data Public

    Datasets to use with ALICE

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