Repo for Sixth Sense IEEG Focality Paper

author: Ryan Gallagher

Getting Started

• clone this repo
  • can use VS Code, Github Desktop, or command line

git clone https://github.com/rgalls/Weighted_Distance.git [path_to_local]

• install anaconda or miniconda

• open terminal at main codebase folder, run:

conda env create -n ieegpy -f environment.yml

• create code/config.json file by editing the example

Description of repo

• /code stores all code
  • /scripts stores python scripts that download/save/format/load raw data, organized in order
  • /notebooks stores jupyter notebooks used for analysis
    • NormAtlas.ipynb formats the normative atlas data
    • Focality_IO_Data.ipynb analyzes bandpower and networks for patients
    • WeightedStandardDistance.ipynb completes the analysis of the paper
  • /tools stores functions used throughout code base (c: Akash Pattnaik), reformatted to separate bandpower and coherence measures
• /ieeg-metadata stores metadata associated with ieeg patients
• /data stores the actual ieeg data and intermediaries used throughout analysis

Please contact the CNT or Ryan Gallagher for access to the data.