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17 repositories
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
- Cell-type Relationship Analysis Workflow Done Across Distances
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
MERmaid
PublicWebGL-based viewer for spatially-resolved transcriptomics dataveloviz
PublicMERINGUE
Publiccharacterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densitiessnakepit
PublicHoneyBADGER
PublicHMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq dataNSF_CAREER
PublicR-style-guide
PublicBest practices for readable, sharable, and verifiable R code