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@DIAGNijmegen Diagnostic Image Analysis Group

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    152 repositories

    • rse-pyswot

      Public
      Python implementation of JetBrains/swot
      Python
      •
      Apache License 2.0
      •1•1•0•0•Updated Oct 1, 2024Oct 1, 2024

    • rse-cirrus-benchmark-suite

      Public
      A small playwright-based CIRRUS benchmark suite, meant to detect speedups or slowdowns.
      grand-challenge
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • website-content

      Public
      This repository stores all the content for the diag websites.
      TeX
      •
      MIT License
      •73•6•29•13•Updated Sep 30, 2024Sep 30, 2024

    • Literature

      Public
      The literature generated and cited by the group
      TeX
      •2•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • LEOPARD-challenge-baseline

      Public
      Python
      •0•1•0•0•Updated Sep 26, 2024Sep 26, 2024

    • nnUNet-for-pathology

      Public
      Adapted nnUNet framework with additional features to suit the requirements for pathology applications
      Python
      •
      Apache License 2.0
      •1.7k•9•0•0•Updated Sep 25, 2024Sep 25, 2024

    • dinov2

      Public
      Adaption of DINOv2 for computational pathology
      Python
      •782•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •893•0•0•0•Updated Sep 24, 2024Sep 24, 2024

    • pathology-hooknet

      Public
      Jupyter Notebook
      •
      MIT License
      •10•52•5•0•Updated Sep 23, 2024Sep 23, 2024

    • rse-grand-challenge-forge

      Public
      Generation of challenge packs
      Python
      •
      Apache License 2.0
      •0•0•3•0•Updated Sep 23, 2024Sep 23, 2024

    • picai_eval

      Public
      Evaluation of 3D detection and diagnosis performance —geared towards prostate cancer detection in MRI.
      detectionrocdiagnosisprecision-recallfrocmetricsevaluation
      Python
      •
      Apache License 2.0
      •9•19•1•1•Updated Sep 21, 2024Sep 21, 2024

    • picai_labels

      Public
      Annotations for the PI-CAI Challenge: Public Training and Development Dataset
      Other
      •23•48•0•0•Updated Sep 19, 2024Sep 19, 2024

    • picai_prep

      Public
      Preprocessing 3D medical images and image archives —geared towards prostate cancer detection in MRI.
      datasetsmhaimage-archivesdicommedical-imaging
      Python
      •
      Apache License 2.0
      •5•19•0•0•Updated Sep 18, 2024Sep 18, 2024

    • dragon_baseline

      Public
      Baseline training algorithm for the DRAGON challenge (dragon.grand-challenge.org)
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • MultiStainDeepLearning

      Public
      Code from Foersch et al. (Under Construction / Development)
      Python
      •
      GNU General Public License v3.0
      •9•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • dragon_prep

      Public
      Preprocessing scripts for the DRAGON benchmark
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • pathology-whole-slide-data

      Public
      A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
      pythondeep-learningiteratorwsdpathologywhole-slide-imagingwsicomputational-pathologywsmwsa
      Python
      •
      Apache License 2.0
      •27•92•4•1•Updated Sep 9, 2024Sep 9, 2024

    • dragon_submission

      Public
      Template for a submission to the DRAGON challenge (dragon.grand-challenge.org)
      Shell
      •
      Apache License 2.0
      •1•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • dragon_eval

      Public
      Evaluation method for the DRAGON challenge (dragon.grand-challenge.org)
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 5, 2024Sep 5, 2024

    • pathology-hooknet-tls

      Public
      Jupyter Notebook
      •
      MIT License
      •2•11•10•0•Updated Sep 4, 2024Sep 4, 2024

    • rse-gcapi

      Public
      Python client for the grand-challenge.org API
      Python
      •
      Apache License 2.0
      •3•2•6•2•Updated Aug 28, 2024Aug 28, 2024

    • PANORAMA_baseline

      Public
      Python
      •
      Apache License 2.0
      •2•4•1•0•Updated Aug 20, 2024Aug 20, 2024

    • deepops

      Public
      Tools for building GPU clusters
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •325•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • rse-sagemaker-shim

      Public
      Adapts algorithms that implement the Grand Challenge inference API for running in SageMaker
      sagemakergrand-challenge
      Python
      •
      Apache License 2.0
      •0•1•4•0•Updated Aug 15, 2024Aug 15, 2024

    • panorama_labels

      Public
      Other
      •1•6•1•0•Updated Aug 6, 2024Aug 6, 2024

    • DuneAI-Automated-detection-and-segmentation-of-non-small-cell-lung-cancer-computed-tomography-images

      Public
      Jupyter Notebook
      •
      Other
      •19•0•0•1•Updated Aug 6, 2024Aug 6, 2024

    • pathology-whole-slide-learning

      Public
      library for weak whole slide learning with attention to compress and classify whole slide images
      Python
      •
      MIT License
      •1•0•1•0•Updated Aug 4, 2024Aug 4, 2024

    • ACOUSLIC-AI-evaluation-method

      Public
      Python
      •
      Apache License 2.0
      •2•2•0•0•Updated Jul 24, 2024Jul 24, 2024

    • picai_baseline

      Public
      Baseline AI models for 3D csPCa detection/diagnosis in bpMRI
      Python
      •
      Apache License 2.0
      •21•44•1•0•Updated Jul 7, 2024Jul 7, 2024

    • MedSAM

      Public
      Segment Anything in Medical Images
      Jupyter Notebook
      •
      Apache License 2.0
      •385•0•0•1•Updated Jul 2, 2024Jul 2, 2024