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Add --fs-no-resume option to reuse existing freesurfer outputs without resuming (eg. longitudinal pipeline base) #393

Merged
merged 21 commits into from
Mar 22, 2024
Merged

Add --fs-no-resume option to reuse existing freesurfer outputs without resuming (eg. longitudinal pipeline base) #393

merged 21 commits into from
Mar 22, 2024

Commits on Sep 29, 2023

  1. wip: add a flag to reuse freesurfer as is, for longitudinal base case

    @bpinsard
    bpinsard committed Sep 29, 2023
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Commits on Sep 30, 2023

  1. first pass, fix errors

    @bpinsard
    bpinsard committed Sep 30, 2023
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Commits on Oct 1, 2023

  1. fix workflows connections

    @bpinsard
    bpinsard committed Oct 1, 2023
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Commits on Oct 5, 2023

  1. flake8

    @bpinsard
    bpinsard committed Oct 5, 2023
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  2. fix doc building

    @bpinsard
    bpinsard committed Oct 5, 2023
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  3. typo

    @bpinsard
    bpinsard committed Oct 5, 2023
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  4. fix docs 2

    @bpinsard
    bpinsard committed Oct 5, 2023
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Commits on Oct 19, 2023

  1. Merge remote-tracking branch 'upstream/next' into enh/fs_long

    @bpinsard
    bpinsard committed Oct 19, 2023
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Commits on Oct 20, 2023

  1. fix merge errors

    @bpinsard
    bpinsard committed Oct 20, 2023
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  2. fix docs

    @bpinsard
    bpinsard committed Oct 20, 2023
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  3. add circleci tests for --fs-reuse-base

    @bpinsard
    bpinsard committed Oct 20, 2023
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Commits on Nov 21, 2023

  1. Merge remote-tracking branch 'upstream/master' into enh/fs_long

    @bpinsard
    bpinsard committed Nov 21, 2023
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Commits on Jan 15, 2024

  1. Merge remote-tracking branch 'upstream/master' into enh/fs_long

    @bpinsard
    bpinsard committed Jan 15, 2024
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  2. conform with new style rules

    @bpinsard
    bpinsard committed Jan 15, 2024
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Commits on Mar 14, 2024

  1. Update .circleci/config.yml 

    Co-authored-by: Chris Markiewicz <effigies@gmail.com>
    @bpinsard @effigies
    bpinsard and effigies authored Mar 14, 2024
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  2. change option name to --fs-no-resume

    @bpinsard
    bpinsard committed Mar 14, 2024
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  3. Merge remote-tracking branch 'upstream/master' into enh/fs_long

    @bpinsard
    bpinsard committed Mar 14, 2024
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Commits on Mar 15, 2024

  1. adjust docstrings

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    bpinsard committed Mar 15, 2024
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Commits on Mar 20, 2024

  1. fix rebase/merge messups, docstrings

    @bpinsard
    bpinsard committed Mar 20, 2024
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Commits on Mar 22, 2024

  1. Merge branch 'master' into enh/fs_long

    @effigies
    effigies authored Mar 22, 2024
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  2. Apply suggestions from code review

    @effigies
    effigies authored Mar 22, 2024
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