Modules: Add --profile parameter to nf-test command

[mashehu]

fixes #2753

[codecov]

Codecov Report

Attention: 1 lines in your changes are missing coverage. Please review.

Comparison is base (f016e45) 73.39% compared to head (f4a4c2f) 73.39%.
Report is 34 commits behind head on dev.

Files	Patch %	Lines
nf_core/components/components_test.py	75.00%	1 Missing ⚠️

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[mirpedrol]

LGTM!

[jfy133]

I just tried after installing

pip install --upgrade --force-reinstall git+https://github.com/mashehu/tools.git@nf-test-profiles

But wherever I put the --profile flag after the test subcommand, I still get asked which profile to use.

That I said I do get an error if I leave the flag empty, so it half worked 😅

                                          ,--./,-.
          ___     __   __   __   ___     /,-._.--~\
    |\ | |__  __ /  ` /  \ |__) |__         }  {
    | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                          `._,._,'

    nf-core/tools version 2.13.dev0 - https://nf-co.re


                                                                                                    
 Usage: nf-core modules test [OPTIONS] <tool> or <tool/subtool>                                     
                                                                                                    
 Try 'nf-core modules test -h' for help                                                             
╭─ Error ──────────────────────────────────────────────────────────────────────────────────────────╮
│ Invalid value for '--profile': 'samtools/cat' is not one of 'docker', 'singularity', 'conda'.    │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
                                                                                                    
$ nf-core modules test --profile conda samtools/cat

                                          ,--./,-.
          ___     __   __   __   ___     /,-._.--~\
    |\ | |__  __ /  ` /  \ |__) |__         }  {
    | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                          `._,._,'

    nf-core/tools version 2.13.dev0 - https://nf-co.re


? Choose container software to run the test with (Use arrow keys)
 » Docker
   Singularity
   Conda

[jfy133]

Works as requested, thank you :D