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Remove nfcore_external_java_deps.jar from lib directory in pipeline template #2675

Merged
merged 11 commits into from
Jan 26, 2024
Merged

Remove nfcore_external_java_deps.jar from lib directory in pipeline template #2675

merged 11 commits into from
Jan 26, 2024

Commits on Jan 20, 2024

  1. Delete nf_core/pipeline-template/lib/nfcore_external_java_deps.jar

    @drpatelh
    drpatelh committed Jan 20, 2024
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  2. Remove invalid reference in pyproject.toml

    @drpatelh
    drpatelh committed Jan 20, 2024
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Commits on Jan 22, 2024

  1. remove lib/nfcore_external_java_deps.jar from list of necessary files

    @mashehu
    mashehu committed Jan 22, 2024
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  2. only fail if file if nf-validation plugin is in nextflow config

    @mashehu
    mashehu committed Jan 22, 2024
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  3. add option to ignore files_unchanged based on nextflow.config

    @mashehu
    mashehu committed Jan 22, 2024
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Commits on Jan 25, 2024

  1. Merge branch 'dev' of github.com:nf-core/tools into rm_nfcore_externa… 

    …l_java_deps

# Conflicts:
#	CHANGELOG.md
    @mashehu
    mashehu committed Jan 25, 2024
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  2. fix type error, switch to pathlib

    @mashehu
    mashehu committed Jan 25, 2024
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Commits on Jan 26, 2024

  1. convert to pathlib and fix tests

    @mashehu
    mashehu committed Jan 26, 2024
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  2. run whole test strategy for template tests even if one fails

    @mashehu
    mashehu committed Jan 26, 2024
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  3. convert pathlibs to strings for comparison

    @mashehu
    mashehu committed Jan 26, 2024
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  4. Merge branch 'dev' into rm_nfcore_external_java_deps

    @mashehu
    mashehu committed Jan 26, 2024
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