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Update tools #41

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maxulysse merged 1 commit into nf-core:dev from maxulysse:environmentUpdate

Oct 9, 2019

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maxulysse commented Oct 9, 2019

Update control-freec from 11.4 to 11.5
Update ensembl-vep from 95.2 to 98.2
Update freebayes from 1.2.0 to 1.3.1
Update gatk4 from 4.1.2.0 to 4.1.4.0
Update manta from 1.5.0 to 1.6.0
Update qualimap from 2.2.2b to 2.2.2c
Update tiddit from 2.7.1 to 2.8.0
Update vcfanno from 0.3.1 to 0.3.2

Many thanks to contributing to nf-core/sarek!

Please fill in the appropriate checklist below (delete whatever is not relevant).
These are the most common things requested on pull requests (PRs).

PR checklist

This comment contains a description of changes (with reason)
If you've fixed a bug or added code that should be tested, add tests!
If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repo
Ensure the test suite passes (nextflow run . -profile test,docker).
Make sure your code lints (nf-core lint .).
Documentation in docs is updated
CHANGELOG.md is updated
README.md is updated

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          update all tools

436af40

maxulysse self-assigned this

maxulysse added the enhancement label

apeltzer approved these changes

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maxulysse merged commit af40f23 into nf-core:dev

maxulysse deleted the environmentUpdate branch

October 9, 2019 16:00

maxulysse mentioned this pull request

update tiddit to 2.8.1 #55

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