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Nf core template merge 2.0.1 #408

Merged
merged 33 commits into from
Jul 19, 2021
Merged

Nf core template merge 2.0.1 #408

merged 33 commits into from
Jul 19, 2021

Commits on Jul 13, 2021

  1. Template update for nf-core/tools version 2.0

    @KevinMenden
    KevinMenden committed Jul 13, 2021
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  2. Template update for nf-core/tools version 2.0.1

    @nf-core-bot
    nf-core-bot committed Jul 13, 2021
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Commits on Jul 15, 2021

  1. Merge remote-tracking branch 'origin/dsl2' into nf-core-template-merg… 

    …e-2.0.1
    @maxulysse
    maxulysse committed Jul 15, 2021
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  2. Merge branch 'dsl2' into nf-core-template-merge-2.0.1

    @maxulysse
    maxulysse committed Jul 15, 2021
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  3. fix: markdownlint

    @maxulysse
    maxulysse committed Jul 15, 2021
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  4. fix: ECLint

    @maxulysse
    maxulysse committed Jul 15, 2021
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  5. fix: ECLint [skip ci]

    @maxulysse
    maxulysse committed Jul 15, 2021
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  6. fix: rename file

    @maxulysse
    maxulysse committed Jul 15, 2021
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  7. fix: json

    @maxulysse
    maxulysse committed Jul 15, 2021
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Commits on Jul 16, 2021

  1. fix: modules

    @maxulysse
    maxulysse committed Jul 16, 2021
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  2. fix: more nf-core lint

    @maxulysse
    maxulysse committed Jul 16, 2021
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  3. fix: files unchanged

    @maxulysse
    maxulysse committed Jul 16, 2021
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  4. fix: more nf-core lint

    @maxulysse
    maxulysse committed Jul 16, 2021
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  5. fix: nf-core lint files unchanged

    @maxulysse
    maxulysse committed Jul 16, 2021
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  6. fix: modules ensemblvep

    @maxulysse
    maxulysse committed Jul 16, 2021
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  7. fix: modules tabix/bgziptabix

    @maxulysse
    maxulysse committed Jul 16, 2021
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  8. fix: modules snpeff

    @maxulysse
    maxulysse committed Jul 16, 2021
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  9. fix: modules gatk4/createsequencedictionary

    @maxulysse
    maxulysse committed Jul 16, 2021
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  10. fix: modules gatk4/createsequencedictionary

    @maxulysse
    maxulysse committed Jul 16, 2021
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  11. fix: update seqkit/split2

    @maxulysse
    maxulysse committed Jul 16, 2021
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  12. fix: update samtools/merge

    @maxulysse
    maxulysse committed Jul 16, 2021
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  13. fix: modules go to local

    @maxulysse
    maxulysse committed Jul 16, 2021
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  14. fix: more modules to local

    @maxulysse
    maxulysse committed Jul 16, 2021
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  15. fix: EClint again

    @maxulysse
    maxulysse committed Jul 16, 2021
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  16. fix: EClint again

    @maxulysse
    maxulysse committed Jul 16, 2021
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  17. fix: nf-core lint

    @maxulysse
    maxulysse committed Jul 16, 2021
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  18. fix: workflow is back

    @maxulysse
    maxulysse committed Jul 16, 2021
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  19. fix: bwa/mem and bwamem2/mem modules

    @maxulysse
    maxulysse committed Jul 16, 2021
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  20. fix: update modules

    @maxulysse
    maxulysse committed Jul 16, 2021
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  21. fix: genome loading in profiles

    @maxulysse
    maxulysse committed Jul 16, 2021
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  22. fix: multiqc args

    @maxulysse
    maxulysse committed Jul 16, 2021
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Commits on Jul 19, 2021

  1. fix: bam -> cram

    @maxulysse
    maxulysse committed Jul 19, 2021
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  2. fix: merge output names

    @maxulysse
    maxulysse committed Jul 19, 2021
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