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fix: cf_ploidy type parameter #381

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May 27, 2021
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2 changes: 1 addition & 1 deletion nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -52,7 +52,7 @@ params {
cf_coeff = 0.05 // default value for Control-FREEC
cf_contamination = null // by default not specified in Control-FREEC
cf_contamination_adjustment = null // by default we are not using this in Control-FREEC
cf_ploidy = "2" // you can use 2,3,4
cf_ploidy = 2 // you can use 2,3,4
cf_window = null // by default we are not using this in Control-FREEC
generate_gvcf = null // g.vcf are not produced by HaplotypeCaller by default
no_strelka_bp = null // Strelka will use Manta candidateSmallIndels if available
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2 changes: 1 addition & 1 deletion nextflow_schema.json
Original file line number Diff line number Diff line change
Expand Up @@ -295,7 +295,7 @@
"description": "Design known contamination value for Control-FREEC"
},
"cf_ploidy": {
"type": "string",
"type": "number",
"default": "2",
"fa_icon": "fas fa-wrench",
"description": "Overwrite Control-FREEC ploidy"
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