Merge pull request #378 from maxulysse/dev_sparkfix

fix: spark issues
nf-core · May 27, 2021 · 962e9da · 962e9da
2 parents 6bd689a + ae806d9
commit 962e9da
Showing 1 changed file with 1 addition and 5 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -150,11 +150,7 @@ profiles {
     podman.enabled = false
     shifter.enabled = false
     charliecloud.enabled = false
-    // Avoid this error:
-    //   WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
-    // Testing this in nf-core after discussion here https://github.com/nf-core/tools/pull/351
-    // once this is established and works well, nextflow might implement this behavior as new default.
-    docker.runOptions = '-u \$(id -u):\$(id -g)'
+    docker.userEmulation = true
   }
   singularity {
     docker.enabled = false