Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

1.1.1 - LATÜRNICH #186

Merged
merged 26 commits into from
Mar 15, 2024
Merged

1.1.1 - LATÜRNICH #186

merged 26 commits into from
Mar 15, 2024

Commits on Feb 28, 2024

  1. bump pipeline version to 1.2.0dev - LATÜRNICH

    @subwaystation
    subwaystation committed Feb 28, 2024
    Configuration menu
    Copy the full SHA
    7b0d784 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #181 from subwaystation/prepare_120 

    bump pipeline version to 1.2.0dev - LATÜRNICH
    @subwaystation
    subwaystation committed Feb 28, 2024
    Configuration menu
    Copy the full SHA
    54af90f View commit details
    Browse the repository at this point in the history

Commits on Feb 29, 2024

  1. Template update for nf-core/tools version 2.13.1

    @nf-core-bot
    nf-core-bot committed Feb 29, 2024
    Configuration menu
    Copy the full SHA
    cf1a29b View commit details
    Browse the repository at this point in the history

Commits on Mar 6, 2024

  1. fix wfmash v0.12.6 parameters

    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    a68f506 View commit details
    Browse the repository at this point in the history

  2. give smoothxg more threads in hla.config

    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    355329f View commit details
    Browse the repository at this point in the history

  3. revert vg version back to 1.40 and update vg deconstruct code

    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    b9ffbeb View commit details
    Browse the repository at this point in the history

  4. Merge branch 'dev' into nf-core-template-merge-2.13.1

    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    853c2f3 View commit details
    Browse the repository at this point in the history

  5. merge template update 2.13.1

    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    244a445 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'dev' into nf-core-template-merge-2.13.1

    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    0f69e5d View commit details
    Browse the repository at this point in the history

  7. Update nextflow.config 

    Bug
    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    fae571a View commit details
    Browse the repository at this point in the history

  8. Update nextflow.config

    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    9250435 View commit details
    Browse the repository at this point in the history

  9. Merge pull request #182 from nf-core/nf-core-template-merge-2.13.1 

    Important! Template update for nf-core/tools v2.13.1
    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    2c3e231 View commit details
    Browse the repository at this point in the history

  10. Merge branch 'dev' into wfmash_0.12.6_parameters

    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    5adbc20 View commit details
    Browse the repository at this point in the history

  11. Merge pull request #183 from nf-core/wfmash_0.12.6_parameters 

    fix wfmash v0.12.6 parameters and other bugs
    @subwaystation
    subwaystation committed Mar 6, 2024
    Configuration menu
    Copy the full SHA
    7ebd370 View commit details
    Browse the repository at this point in the history

Commits on Mar 13, 2024

  1. bump bcftools to 1.19

    @subwaystation
    subwaystation committed Mar 13, 2024
    Configuration menu
    Copy the full SHA
    d8f2aa7 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #184 from nf-core/bcftools_1.19 

    bump bcftools to 1.19
    @subwaystation
    subwaystation committed Mar 13, 2024
    Configuration menu
    Copy the full SHA
    f6f86fd View commit details
    Browse the repository at this point in the history

Commits on Mar 14, 2024

  1. prepare 1.1.1 release

    @subwaystation
    subwaystation committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    19ecf00 View commit details
    Browse the repository at this point in the history

  2. Merge pull request #185 from subwaystation/dev 

    prepare 1.1.1 release
    @subwaystation
    subwaystation committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    c42285b View commit details
    Browse the repository at this point in the history

  3. reflect vcf_spec changes also in the schema

    @subwaystation
    subwaystation committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    fe7d639 View commit details
    Browse the repository at this point in the history

  4. Update CHANGELOG.md 

    Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
    @subwaystation @mashehu
    subwaystation and mashehu committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    0ee3458 View commit details
    Browse the repository at this point in the history

  5. Update nextflow_schema.json 

    Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
    @subwaystation @mashehu
    subwaystation and mashehu committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    b2cb539 View commit details
    Browse the repository at this point in the history

  6. remove warning as suggested by review

    @subwaystation
    subwaystation committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    b9434e3 View commit details
    Browse the repository at this point in the history

  7. Update nextflow_schema.json 

    Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
    @subwaystation @mashehu
    subwaystation and mashehu committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    c19f69a View commit details
    Browse the repository at this point in the history

  8. Update .github/workflows/linting.yml 

    Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
    @subwaystation @mashehu
    subwaystation and mashehu committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    3071e95 View commit details
    Browse the repository at this point in the history

  9. revert liniting.yml review suggestion

    @subwaystation
    subwaystation committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    57aa173 View commit details
    Browse the repository at this point in the history

  10. Update .github/workflows/download_pipeline.yml 

    Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
    @subwaystation @mashehu
    subwaystation and mashehu committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    5daf69e View commit details
    Browse the repository at this point in the history